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OpenMS
2.6.0
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121 void getIdentifications(std::vector<ProteinIdentification>& proteins, std::vector<PeptideIdentification>& peptides)
const;
129 void getMS2Identifications(std::vector<ProteinIdentification>& proteins, std::vector<PeptideIdentification>& peptides)
const;
137 void getFeatureIdentifications(std::vector<ProteinIdentification>& proteins, std::vector<PeptideIdentification>& peptides)
const;
140 Param getParameters()
const;
144 void syncParams_(
Param& p,
bool to_outer);
150 void updateMembers_()
override;
SimTypes::MSSimExperiment peak_map_
Holds the ground-truth on generated peaks positions and intensities.
Definition: MSSim.h:157
SimTypes::FeatureMapSimVector feature_maps_
Holds the ground-truth on generated features.
Definition: MSSim.h:160
Central class for simulation of mass spectrometry experiments.
Definition: MSSim.h:68
In-Memory representation of a mass spectrometry experiment.
Definition: MSExperiment.h:77
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
SimTypes::MSSimExperiment experiment_
Holds the simulated data.
Definition: MSSim.h:154
std::vector< SimProtein > SampleProteins
Container for FASTAEntry & abundance information.
Definition: SimTypes.h:90
boost::shared_ptr< SimRandomNumberGenerator > MutableSimRandomNumberGeneratorPtr
Definition: SimTypes.h:174
std::vector< SampleProteins > SampleChannels
Container for multiple channels of SampleProteins.
Definition: SimTypes.h:93
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:92
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
Base class for all classes that want to report their progress.
Definition: ProgressLogger.h:54
ConsensusMap consensus_map_
Holds consensus ground-truth about the charge associations.
Definition: MSSim.h:163
A container for consensus elements.
Definition: ConsensusMap.h:80
std::vector< FeatureMapSim > FeatureMapSimVector
Sim FeatureMap Vector.
Definition: SimTypes.h:99
A container for features.
Definition: FeatureMap.h:97
BaseLabeler * labeler_
Labeling functionality.
Definition: MSSim.h:169
Abstract base class for all kinds of labeling techniques.
Definition: BaseLabeler.h:49
Management and storage of parameters / INI files.
Definition: Param.h:73
SimTypes::FeatureMapSim contaminants_map_
Holds the ground-truth on generated contaminants.
Definition: MSSim.h:166