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OpenMS
2.6.0
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104 void updateMembers_()
override;
121 void checkSolution_(
const ConsensusMap& cons_map)
const;
127 void inferMoreEdges_(
PairsType& edges,
Map<
Size, std::set<CmpInfo_> >& feature_adducts);
134 void printEdgesOfConnectedFeatures_(
Size idx_1,
Size idx_2,
const PairsType& feature_relation);
150 bool chargeTestworthy_(
const Int feature_charge,
const Int putative_charge,
const bool other_unchanged)
const;
Base class for TOPP applications.
Definition: TOPPBase.h:144
Param copy(const String &prefix, bool remove_prefix=false) const
Returns a new Param object containing all entries that start with prefix.
void store(const String &filename, const ConsensusMap &consensus_map)
Stores a consensus map to file.
std::vector< ChargePair > PairsType
Definition: ILPDCWrapper.h:55
A more convenient string class.
Definition: String.h:59
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:92
Holds information on an edge connecting two features from a (putative) charge ladder.
Definition: Compomer.h:58
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
void load(const String &filename, FeatureMap &feature_map)
loads the file with name filename into map and calls updateRanges().
void start()
Start the stop watch.
void stop()
Stop the stop watch (can be resumed later). If the stop watch was not running an exception is thrown.
void setParameters(const Param ¶m)
Sets the parameters.
Adduct::AdductsType AdductsType
Definition: MassExplainer.h:60
const Param & getParameters() const
Non-mutable access to the parameters.
A container for consensus elements.
Definition: ConsensusMap.h:80
void store(const String &filename, const FeatureMap &feature_map)
stores the map feature_map in file with name filename.
unsigned int UInt
Unsigned integer type.
Definition: Types.h:94
Charge deconvolution.
Definition: DataProcessing.h:61
This class is used to determine the current process' CPU (user and/or kernel) and wall time.
Definition: StopWatch.h:65
int main(int argc, const char **argv)
Definition: INIFileEditor.cpp:73
const ColumnHeaders & getColumnHeaders() const
Non-mutable access to the file descriptions.
A container for features.
Definition: FeatureMap.h:97
An LC-MS feature.
Definition: Feature.h:70
This class provides Input/Output functionality for feature maps.
Definition: FeatureXMLFile.h:68
Management and storage of parameters / INI files.
Definition: Param.h:73
Map class based on the STL map (containing several convenience functions)
Definition: Map.h:50
void insert(const String &prefix, const Param ¶m)
std::ifstream infile
Questionable file tested by TEST_FILE_EQUAL.
This class provides Input functionality for ConsensusMaps and Output functionality for alignments and...
Definition: ConsensusXMLFile.h:62