RawTandemMSSignalSimulation.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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// This software is released under a three-clause BSD license:
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// $Maintainer: Timo Sachsenberg $
// $Authors: Stephan Aiche, Chris Bielow, Sandro Andreotti $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/SIMULATION/SimTypes.h>
 
namespace OpenMS
{
 
  class OPENMS_DLLAPI RawTandemMSSignalSimulation :
    public DefaultParamHandler
  {
public:
 
 
    RawTandemMSSignalSimulation();
 
    explicit RawTandemMSSignalSimulation(SimTypes::MutableSimRandomNumberGeneratorPtr rng);
 
    RawTandemMSSignalSimulation(const RawTandemMSSignalSimulation& source);
 
    ~RawTandemMSSignalSimulation() override;
 
    RawTandemMSSignalSimulation& operator=(const RawTandemMSSignalSimulation& source);
 
 
    void generateRawTandemSignals(const SimTypes::FeatureMapSim&, SimTypes::MSSimExperiment&, SimTypes::MSSimExperiment&);
 
 
protected:
 
    void initParam_();
 
    void generateMSESpectra_(const SimTypes::FeatureMapSim& features, const SimTypes::MSSimExperiment& experiment, SimTypes::MSSimExperiment& ms2);
 
    void generatePrecursorSpectra_(const SimTypes::FeatureMapSim& features, const SimTypes::MSSimExperiment& experiment, SimTypes::MSSimExperiment& ms2);
 
    SimTypes::MutableSimRandomNumberGeneratorPtr  rnd_gen_;
  };
 
}