SingleLinkage.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2020.
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// $Maintainer: Mathias Walzer $
// $Authors: $
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//
#pragma once
 
#include <vector>
#include <set>
#include <limits>
#include <algorithm>
 
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/DATASTRUCTURES/DistanceMatrix.h>
#include <OpenMS/COMPARISON/CLUSTERING/ClusterFunctor.h>
 
namespace OpenMS
{
  class OPENMS_DLLAPI SingleLinkage :
    public ClusterFunctor, public ProgressLogger
  {
public:
 
    SingleLinkage();
 
    SingleLinkage(const SingleLinkage & source);
 
    ~SingleLinkage() override;
 
    SingleLinkage & operator=(const SingleLinkage & source);
 
    void operator()(DistanceMatrix<float> & original_distance, std::vector<BinaryTreeNode> & cluster_tree, const float threshold = 1) const override;
 
    static ClusterFunctor * create();
 
    static const String getProductName();
  };
 
 
 
}