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OpenMS
2.6.0
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96 void updateMembers_()
override;
120 void addLossesFaster_(
PeakSpectrum& spectrum,
double mz,
const std::set<EmpiricalFormula>& f_losses,
int ion_ordinal,
DataArrays::StringDataArray& ion_names,
DataArrays::IntegerDataArray& charges,
const std::map<EmpiricalFormula, String>& formula_str_cache,
double intensity,
const Residue::ResidueType res_type,
bool add_metainfo,
int charge)
const;
Integer data array class.
Definition: DataArrays.h:52
double rel_loss_intensity_
Definition: TheoreticalSpectrumGenerator.h:145
bool add_first_prefix_ion_
Definition: TheoreticalSpectrumGenerator.h:128
double pre_int_H2O_
Definition: TheoreticalSpectrumGenerator.h:148
bool add_isotopes_
Definition: TheoreticalSpectrumGenerator.h:131
double b_intensity_
Definition: TheoreticalSpectrumGenerator.h:138
Int max_isotope_
Definition: TheoreticalSpectrumGenerator.h:144
bool add_z_ions_
Definition: TheoreticalSpectrumGenerator.h:127
bool add_metainfo_
Definition: TheoreticalSpectrumGenerator.h:130
bool add_x_ions_
Definition: TheoreticalSpectrumGenerator.h:126
bool add_a_ions_
Definition: TheoreticalSpectrumGenerator.h:124
bool add_abundant_immonium_ions_
Definition: TheoreticalSpectrumGenerator.h:135
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:92
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
double x_intensity_
Definition: TheoreticalSpectrumGenerator.h:140
bool add_b_ions_
Definition: TheoreticalSpectrumGenerator.h:122
double a_intensity_
Definition: TheoreticalSpectrumGenerator.h:137
int isotope_model_
Definition: TheoreticalSpectrumGenerator.h:132
ResidueType
Definition: Residue.h:151
String data array class.
Definition: DataArrays.h:59
double pre_int_
Definition: TheoreticalSpectrumGenerator.h:147
bool add_precursor_peaks_
Definition: TheoreticalSpectrumGenerator.h:133
bool add_all_precursor_charges_
Definition: TheoreticalSpectrumGenerator.h:134
Generates theoretical spectra for peptides with various options.
Definition: TheoreticalSpectrumGenerator.h:68
bool add_c_ions_
Definition: TheoreticalSpectrumGenerator.h:125
double max_isotope_probability_
Definition: TheoreticalSpectrumGenerator.h:146
bool add_losses_
Definition: TheoreticalSpectrumGenerator.h:129
bool add_y_ions_
Definition: TheoreticalSpectrumGenerator.h:123
double pre_int_NH3_
Definition: TheoreticalSpectrumGenerator.h:149
Representation of a peptide/protein sequence.
Definition: AASequence.h:111
double c_intensity_
Definition: TheoreticalSpectrumGenerator.h:139
double y_intensity_
Definition: TheoreticalSpectrumGenerator.h:141
bool sort_by_position_
Definition: TheoreticalSpectrumGenerator.h:136
The representation of a 1D spectrum.
Definition: MSSpectrum.h:67
double z_intensity_
Definition: TheoreticalSpectrumGenerator.h:142
Definition: MSSpectrum.h:88