OpenMS
2.6.0
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Repairs MALDI experiments which were spotted line by line.
The command line parameters of this tool are:
DeMeanderize -- Orders the spectra of MALDI spotting plates correctly. Full documentation: http://www.openms.de/documentation/UTILS_DeMeanderize.html Version: 2.6.0 Sep 30 2020, 12:54:34, Revision: c26f752 To cite OpenMS: Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959. Usage: DeMeanderize <options> Options (mandatory options marked with '*'): -in <mzML-file>* Input experiment file, containing the wrongly sorted spectra. (valid formats: 'mzML') -out <mzML-file>* Output experiment file with correctly sorted spectra. (valid formats: 'mzML') -num_spots_per_row <integer> Number of spots in one column, until next row is spotted. (default: '48' min: '1') Common UTIL options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool: