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FeatureFinderAlgorithmMetaboIdent Member List

This is the complete list of members for FeatureFinderAlgorithmMetaboIdent, including all inherited members.

addTargetAnnotations_(FeatureMap &features)FeatureFinderAlgorithmMetaboIdentprotected
addTargetRT_(TargetedExperiment::Compound &target, double rt)FeatureFinderAlgorithmMetaboIdentprotected
addTargetToLibrary_(const String &name, const String &formula, double mass, const std::vector< Int > &charges, const std::vector< double > &rts, std::vector< double > rt_ranges, const std::vector< double > &iso_distrib)FeatureFinderAlgorithmMetaboIdentprotected
annotateFeatures_(FeatureMap &features)FeatureFinderAlgorithmMetaboIdentprotected
calculateMZ_(double mass, Int charge) constFeatureFinderAlgorithmMetaboIdentprotected
candidates_out_FeatureFinderAlgorithmMetaboIdentprotected
check_defaults_DefaultParamHandlerprotected
chrom_data_FeatureFinderAlgorithmMetaboIdentprotected
debug_level_FeatureFinderAlgorithmMetaboIdentprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
elution_model_FeatureFinderAlgorithmMetaboIdentprotected
ensureConvexHulls_(Feature &feature) constFeatureFinderAlgorithmMetaboIdentprotected
error_name_DefaultParamHandlerprotected
extractTransformations_(const FeatureMap &features)FeatureFinderAlgorithmMetaboIdentprotected
feat_finder_FeatureFinderAlgorithmMetaboIdentprotected
feature_compare_FeatureFinderAlgorithmMetaboIdentprotected
feature_filter_FeatureFinderAlgorithmMetaboIdentprotected
FeatureBoundsMap typedefFeatureFinderAlgorithmMetaboIdentprotected
FeatureFinderAlgorithmMetaboIdent()FeatureFinderAlgorithmMetaboIdent
FeatureGroup typedefFeatureFinderAlgorithmMetaboIdentprotected
findOverlappingFeatures_(FeatureMap &features, const FeatureBoundsMap &feature_bounds, std::vector< FeatureGroup > &overlap_groups)FeatureFinderAlgorithmMetaboIdentprotected
generateTransitions_(const String &target_id, double mz, Int charge, const IsotopeDistribution &iso_dist)FeatureFinderAlgorithmMetaboIdentprotected
getChromatograms() constFeatureFinderAlgorithmMetaboIdentinline
getChromatograms()FeatureFinderAlgorithmMetaboIdentinline
getDefaults() constDefaultParamHandler
getFeatureBounds_(const FeatureMap &features, FeatureBoundsMap &feature_bounds)FeatureFinderAlgorithmMetaboIdentprotected
getLibrary() constFeatureFinderAlgorithmMetaboIdentinline
getMSData()FeatureFinderAlgorithmMetaboIdentinline
getMSData() constFeatureFinderAlgorithmMetaboIdentinline
getName() constDefaultParamHandler
getNShared() constFeatureFinderAlgorithmMetaboIdentinline
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
getTransformations() constFeatureFinderAlgorithmMetaboIdentinline
hasOverlappingBounds_(const std::vector< MassTraceBounds > &mtb1, const std::vector< MassTraceBounds > &mtb2) constFeatureFinderAlgorithmMetaboIdentprotected
hasOverlappingFeature_(const Feature &feature, const FeatureGroup &group, const FeatureBoundsMap &feature_bounds) constFeatureFinderAlgorithmMetaboIdentprotected
iso_gen_FeatureFinderAlgorithmMetaboIdentprotected
isotope_pmin_FeatureFinderAlgorithmMetaboIdentprotected
isotope_probs_FeatureFinderAlgorithmMetaboIdentprotected
library_FeatureFinderAlgorithmMetaboIdentprotected
MassTrace typedefFeatureFinderAlgorithmMetaboIdentprotected
MassTraces typedefFeatureFinderAlgorithmMetaboIdentprotected
min_peak_width_FeatureFinderAlgorithmMetaboIdentprotected
ms_data_FeatureFinderAlgorithmMetaboIdentprotected
mz_window_FeatureFinderAlgorithmMetaboIdentprotected
mz_window_ppm_FeatureFinderAlgorithmMetaboIdentprotected
n_isotopes_FeatureFinderAlgorithmMetaboIdentprotected
n_shared_FeatureFinderAlgorithmMetaboIdentprotected
operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
peak_width_FeatureFinderAlgorithmMetaboIdentprotected
prettyPrintCompound(const TargetedExperiment::Compound &compound)FeatureFinderAlgorithmMetaboIdent
resolveOverlappingFeatures_(FeatureGroup &group, const FeatureBoundsMap &feature_bounds)FeatureFinderAlgorithmMetaboIdentprotected
rt_window_FeatureFinderAlgorithmMetaboIdentprotected
run(const std::vector< FeatureFinderMetaboIdentCompound > &metaboIdentTable, FeatureMap &features)FeatureFinderAlgorithmMetaboIdent
selectFeaturesFromCandidates_(FeatureMap &features)FeatureFinderAlgorithmMetaboIdentprotected
setMSData(const PeakMap &m)FeatureFinderAlgorithmMetaboIdentinline
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
signal_to_noise_FeatureFinderAlgorithmMetaboIdentprotected
subsections_DefaultParamHandlerprotected
target_rts_FeatureFinderAlgorithmMetaboIdentprotected
trafo_FeatureFinderAlgorithmMetaboIdentprotected
updateMembers_() overrideFeatureFinderAlgorithmMetaboIdentprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
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