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OpenMS
2.7.0
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OpenMS
2.7.0
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This is the complete list of members for ModificationsDB, including all inherited members.
| addModification(std::unique_ptr< ResidueModification > new_mod) | ModificationsDB | |
| CrossLinksDB class | ModificationsDB | friend |
| findModificationIndex(const String &mod_name) const | ModificationsDB | |
| getAllSearchModifications(std::vector< String > &modifications) const | ModificationsDB | |
| getBestModificationByDiffMonoMass(double mass, double max_error, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) | ModificationsDB | |
| getInstance() | ModificationsDB | static |
| getModification(Size index) const | ModificationsDB | |
| getModification(const String &mod_name, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) const | ModificationsDB | |
| getNumberOfModifications() const | ModificationsDB | |
| has(const String &modification) const | ModificationsDB | |
| initializeModificationsDB(OpenMS::String unimod_file="CHEMISTRY/unimod.xml", OpenMS::String psimod_file="CHEMISTRY/PSI-MOD.obo", OpenMS::String xlmod_file="CHEMISTRY/XLMOD.obo") | ModificationsDB | static |
| is_instantiated_ | ModificationsDB | protectedstatic |
| isInstantiated() | ModificationsDB | static |
| modification_names_ | ModificationsDB | protected |
| ModificationsDB(OpenMS::String unimod_file="CHEMISTRY/unimod.xml", OpenMS::String psimod_file="CHEMISTRY/PSI-MOD.obo", OpenMS::String xlmod_file="CHEMISTRY/XLMOD.obo") | ModificationsDB | explicitprivate |
| ModificationsDB(const ModificationsDB &residue_db) | ModificationsDB | private |
| mods_ | ModificationsDB | protected |
| operator=(const ModificationsDB &aa) | ModificationsDB | private |
| readFromOBOFile(const String &filename) | ModificationsDB | private |
| readFromUnimodXMLFile(const String &filename) | ModificationsDB | private |
| residuesMatch_(const char residue, const ResidueModification *curr_mod) const | ModificationsDB | protected |
| searchModifications(std::set< const ResidueModification * > &mods, const String &mod_name, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) const | ModificationsDB | |
| searchModificationsByDiffMonoMass(std::vector< String > &mods, double mass, double max_error, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) | ModificationsDB | |
| searchModificationsByDiffMonoMass(std::vector< const ResidueModification * > &mods, double mass, double max_error, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) | ModificationsDB | |
| searchModificationsByDiffMonoMassSorted(std::vector< String > &mods, double mass, double max_error, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) | ModificationsDB | |
| searchModificationsByDiffMonoMassSorted(std::vector< const ResidueModification * > &mods, double mass, double max_error, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) | ModificationsDB | |
| searchModificationsFast(const String &mod_name, bool &multiple_matches, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY) const | ModificationsDB | |
| writeTSV(const String &filename) | ModificationsDB | |
| ~ModificationsDB() | ModificationsDB | privatevirtual |
1.9.1