SILACLabeler Member List

This is the complete list of members for SILACLabeler, including all inherited members.

addModificationToPeptideHit_(Feature &feature, const String &modification) const	SILACLabeler	protected
applyLabelToProteinHit_(SimTypes::FeatureMapSim &protein_hit, const String &arginine_label, const String &lysine_label) const	SILACLabeler	protected
BaseLabeler()	BaseLabeler
canModificationBeApplied_(const String &modification_id, const String &aa) const	SILACLabeler	protected
channel_description_	BaseLabeler	protected
check_defaults_	DefaultParamHandler	protected
consensus_	BaseLabeler	protected
create()	SILACLabeler	inlinestatic
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
getChannelIntensityName(const Size channel_index) const	BaseLabeler
getConsensus()	BaseLabeler
getDefaultParameters() const	BaseLabeler	virtual
getDefaults() const	DefaultParamHandler
getDescription() const	BaseLabeler
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getProductName()	SILACLabeler	inlinestatic
getSubsections() const	DefaultParamHandler
getUnmodifiedSequence_(const Feature &feature, const String &arginine_label, const String &lysine_label) const	SILACLabeler	protected
heavy_channel_arginine_label_	SILACLabeler	protected
heavy_channel_lysine_label_	SILACLabeler	protected
HEAVY_FEATURE_MAPID_	SILACLabeler	privatestatic
LIGHT_FEATURE_MAPID_	SILACLabeler	privatestatic
medium_channel_arginine_label_	SILACLabeler	protected
medium_channel_lysine_label_	SILACLabeler	protected
MEDIUM_FEATURE_MAPID_	SILACLabeler	privatestatic
mergeAllChannelFeatures_(Feature &heavy_channel_feature, const String &unmodified_feature_sequence, Map< String, Feature > &light_channel_feature_index, Map< String, Feature > &medium_channel_feature_index) const	SILACLabeler	protected
mergeFeatures_(Feature &labeled_channel_feature, const String &unmodified_sequence, Map< String, Feature > &unlabeled_features_index, Int index_channel_id, Int labeled_channel_id) const	SILACLabeler	protected
mergeProteinAccessions_(Feature &target, const Feature &source) const	BaseLabeler	protected
mergeProteinIdentificationsMaps_(const SimTypes::FeatureMapSimVector &maps)	BaseLabeler	protected
operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
postDetectabilityHook(SimTypes::FeatureMapSimVector &) override	SILACLabeler	virtual
postDigestHook(SimTypes::FeatureMapSimVector &) override	SILACLabeler	virtual
postIonizationHook(SimTypes::FeatureMapSimVector &) override	SILACLabeler	virtual
postRawMSHook(SimTypes::FeatureMapSimVector &) override	SILACLabeler	virtual
postRawTandemMSHook(SimTypes::FeatureMapSimVector &, SimTypes::MSSimExperiment &) override	SILACLabeler	virtual
postRTHook(SimTypes::FeatureMapSimVector &) override	SILACLabeler	virtual
preCheck(Param &) const override	SILACLabeler	virtual
recomputeConsensus_(const SimTypes::FeatureMapSim &simulated_features)	BaseLabeler	protected
registerChildren()	BaseLabeler	static
rng_	BaseLabeler	protected
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setRnd(SimTypes::MutableSimRandomNumberGeneratorPtr rng)	BaseLabeler	virtual
setUpHook(SimTypes::FeatureMapSimVector &) override	SILACLabeler	virtual
SILACLabeler()	SILACLabeler
subsections_	DefaultParamHandler	protected
updateMembers_() override	SILACLabeler	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="")	DefaultParamHandler	static
~BaseLabeler() override	BaseLabeler
~DefaultParamHandler()	DefaultParamHandler	virtual
~SILACLabeler() override	SILACLabeler