| aa_to_index_ | SvmTheoreticalSpectrumGenerator | protectedstatic |
| basicity_ | SvmTheoreticalSpectrumGenerator | protectedstatic |
| check_defaults_ | DefaultParamHandler | protected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| error_name_ | DefaultParamHandler | protected |
| generateDescriptorSet_(AASequence peptide, Size position, IonType type, Size precursor_charge, DescriptorSet &desc_set) | SvmTheoreticalSpectrumGenerator | protected |
| getDefaults() const | DefaultParamHandler | |
| getIonTypes() | SvmTheoreticalSpectrumGenerator | inline |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| helicity_ | SvmTheoreticalSpectrumGenerator | protectedstatic |
| hide_type_ | SvmTheoreticalSpectrumGenerator | protected |
| hydrophobicity_ | SvmTheoreticalSpectrumGenerator | protectedstatic |
| initializedMaps_ | SvmTheoreticalSpectrumGenerator | protectedstatic |
| initializeMaps_() | SvmTheoreticalSpectrumGenerator | protectedstatic |
| IntensityMap typedef | SvmTheoreticalSpectrumGenerator | protected |
| load() | SvmTheoreticalSpectrumGenerator | |
| mp_ | SvmTheoreticalSpectrumGenerator | protected |
| operator=(const SvmTheoreticalSpectrumGenerator &tsg) | SvmTheoreticalSpectrumGenerator | |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| precursor_charge_ | SvmTheoreticalSpectrumGenerator | protected |
| ResidueTypeToString_(Residue::ResidueType type) | SvmTheoreticalSpectrumGenerator | protected |
| scaleDescriptorSet_(DescriptorSet &desc, double lower, double upper) | SvmTheoreticalSpectrumGenerator | protected |
| scaleSingleFeature_(double &value, double feature_min, double feature_max, double lower=-1.0, double upper=1.0) | SvmTheoreticalSpectrumGenerator | inlineprotected |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| simulate(PeakSpectrum &spectrum, const AASequence &peptide, boost::random::mt19937_64 &rng, Size precursor_charge) | SvmTheoreticalSpectrumGenerator | |
| subsections_ | DefaultParamHandler | protected |
| SvmTheoreticalSpectrumGenerator() | SvmTheoreticalSpectrumGenerator | |
| SvmTheoreticalSpectrumGenerator(const SvmTheoreticalSpectrumGenerator &source) | SvmTheoreticalSpectrumGenerator | |
| SvmTheoreticalSpectrumGeneratorTrainer class | SvmTheoreticalSpectrumGenerator | friend |
| updateMembers_() override | SvmTheoreticalSpectrumGenerator | protectedvirtual |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="") | DefaultParamHandler | static |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~SvmTheoreticalSpectrumGenerator() override | SvmTheoreticalSpectrumGenerator | |
1.9.1