CVTerm.h

Go to the documentation of this file.

// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2021.
//
// This software is released under a three-clause BSD license:
//  * Redistributions of source code must retain the above copyright
//    notice, this list of conditions and the following disclaimer.
//  * Redistributions in binary form must reproduce the above copyright
//    notice, this list of conditions and the following disclaimer in the
//    documentation and/or other materials provided with the distribution.
//  * Neither the name of any author or any participating institution
//    may be used to endorse or promote products derived from this software
//    without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Andreas Bertsch $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/DATASTRUCTURES/DataValue.h>
 
namespace OpenMS
{
 
  class OPENMS_DLLAPI CVTerm
  {
public:
 
    struct Unit
    {
 
      Unit() = default;
 
      Unit(const String& p_accession, const String& p_name, const String& p_cv_ref) :
        accession(p_accession),
        name(p_name),
        cv_ref(p_cv_ref)
      {
      }
 
      Unit(const Unit &) = default;
 
      Unit(Unit&&) = default;
 
      virtual ~Unit()
      {
      }
 
      Unit& operator=(const Unit&) = default;
 
      Unit& operator=(Unit&&)& = default;
 
      bool operator==(const Unit& rhs) const
      {
        return accession == rhs.accession &&
               name == rhs.name &&
               cv_ref == rhs.cv_ref;
      }
 
      bool operator!=(const Unit& rhs) const
      {
        return !(*this == rhs);
      }
 
      String accession;
      String name;
      String cv_ref;
    };
 
    CVTerm() = default;
 
    CVTerm(const String& accession, const String& name = "", const String& cv_identifier_ref = "", const String& value = "", const Unit& unit = Unit());
 
    CVTerm(const CVTerm&) = default;
 
    CVTerm(CVTerm&&) = default;
 
    virtual ~CVTerm();
 
    CVTerm& operator=(const CVTerm&) = default;
 
    CVTerm& operator=(CVTerm&&)& = default;
 
    void setAccession(const String& accession);
 
    const String& getAccession() const;
 
    void setName(const String& name);
 
    const String& getName() const;
 
    void setCVIdentifierRef(const String& cv_identifier_ref);
 
    const String& getCVIdentifierRef() const;
 
    void setValue(const DataValue& value);
 
    const DataValue& getValue() const;
 
    void setUnit(const Unit& unit);
 
    const Unit& getUnit() const;
 
    bool operator==(const CVTerm& rhs) const;
 
    bool operator!=(const CVTerm& rhs) const;
 
    bool hasValue() const;
 
    bool hasUnit() const;
    //}
 
protected:
 
    String accession_;
 
    String name_;
 
    String cv_identifier_ref_;
 
    Unit unit_;
 
    DataValue value_;
  };
 
} // namespace OpenMS