ConsensusIDAlgorithmPEPMatrix.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Hendrik Weisser $
// $Authors: Andreas Bertsch, Marc Sturm, Sven Nahnsen, Hendrik Weisser $
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#pragma once
 
#include <OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.h>
#include <OpenMS/ANALYSIS/SEQUENCE/NeedlemanWunsch.h>
 
namespace OpenMS
{
  class OPENMS_DLLAPI ConsensusIDAlgorithmPEPMatrix :
    public ConsensusIDAlgorithmSimilarity
  {
  public:
    ConsensusIDAlgorithmPEPMatrix();
 
 
  private:
 
    NeedlemanWunsch alignment_;
 
    ConsensusIDAlgorithmPEPMatrix(const ConsensusIDAlgorithmPEPMatrix&);
 
    ConsensusIDAlgorithmPEPMatrix& operator=(const ConsensusIDAlgorithmPEPMatrix&);
 
    double getSimilarity_(AASequence seq1, AASequence seq2) override;
 
    // Docu in base class
    void updateMembers_() override;
  };
 
} // namespace OpenMS