IDBoostGraph.h File Reference

#include <OpenMS/ANALYSIS/ID/MessagePasserFactory.h>
#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/METADATA/ExperimentalDesign.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <vector>
#include <unordered_map>
#include <queue>
#include <boost/function.hpp>
#include <boost/graph/adjacency_list.hpp>
#include <boost/graph/depth_first_search.hpp>
#include <boost/graph/filtered_graph.hpp>
#include <boost/graph/properties.hpp>
#include <boost/variant.hpp>
#include <boost/variant/detail/hash_variant.hpp>
#include <boost/variant/static_visitor.hpp>

Include dependency graph for IDBoostGraph.h:

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Classes
class	IDBoostGraph
	Creates and maintains a boost graph based on the OpenMS ID datastructures. More...
struct	IDBoostGraph::ProteinGroup
	placeholder for peptides with the same parent proteins or protein groups More...
class	IDBoostGraph::dfs_ccsplit_visitor
	A boost dfs visitor that copies connected components into a vector of graphs. More...
class	IDBoostGraph::LabelVisitor
	Visits nodes in the boost graph (ptrs to an ID Object) and depending on their type creates a label e.g. for printing to dot format. More...
class	IDBoostGraph::PrintAddressVisitor< CharT >
	Visits nodes in the boost graph (ptrs to an ID Object) and depending on their type prints the address. For debugging purposes only. More...
class	IDBoostGraph::SetPosteriorVisitor
	Visits nodes in the boost graph (either ptrs to an ID Object or some lightweight surrogates) and depending on their type sets the posterior Don't forget to set higherScoreBetter and score names in the parent ID objects. More...
class	IDBoostGraph::GetPosteriorVisitor
	Visits nodes in the boost graph (either ptrs to an ID Object or some lightweight surrogates) and depending on their type gets the score (usually the posterior) More...
class	IDBoostGraph::GetScoreTgTVisitor
	Visits nodes in the boost graph (either ptrs to an ID Object or some lightweight surrogates) and depending on their type gets the score (usually the posterior) plus if it is a decoy or a target. If not known or not defined, returns (-1.0, false) More...

Namespaces
	OpenMS
	Main OpenMS namespace.
	OpenMS::Internal
	Namespace used to hide implementation details from users.

Functions
bool	operator== (const IDBoostGraph::ProteinGroup &lhs, const IDBoostGraph::ProteinGroup &rhs)

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Class Documentation

OpenMS::Internal::IDBoostGraph::ProteinGroup

struct OpenMS::Internal::IDBoostGraph::ProteinGroup

placeholder for peptides with the same parent proteins or protein groups

indistinguishable protein groups (size, nr targets, score)

Collaboration diagram for IDBoostGraph::ProteinGroup:

Class Members
double	score
int	size
int	tgts