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RNPXL
RNPxlMarkerIonExtractor.h
Go to the documentation of this file.
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// --------------------------------------------------------------------------
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// OpenMS -- Open-Source Mass Spectrometry
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// --------------------------------------------------------------------------
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// ETH Zurich, and Freie Universitaet Berlin 2002-2021.
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//
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// This software is released under a three-clause BSD license:
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// * Redistributions of source code must retain the above copyright
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// notice, this list of conditions and the following disclaimer.
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// * Redistributions in binary form must reproduce the above copyright
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// notice, this list of conditions and the following disclaimer in the
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// documentation and/or other materials provided with the distribution.
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// * Neither the name of any author or any participating institution
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// may be used to endorse or promote products derived from this software
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// without specific prior written permission.
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// For a full list of authors, refer to the file AUTHORS.
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// --------------------------------------------------------------------------
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
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// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
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// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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// --------------------------------------------------------------------------
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// $Maintainer: Timo Sachsenberg $
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// $Authors: Timo Sachsenberg $
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// --------------------------------------------------------------------------
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#pragma once
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#include <
OpenMS/KERNEL/StandardTypes.h
>
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#include <map>
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#include <vector>
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namespace
OpenMS
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{
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class
String;
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struct
OPENMS_DLLAPI
RNPxlMarkerIonExtractor
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{
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typedef
std::map<String, std::vector<std::pair<double, double> > >
MarkerIonsType
;
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static
MarkerIonsType
extractMarkerIons
(
const
PeakSpectrum
& s,
const
double
marker_tolerance);
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};
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}
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StandardTypes.h
OpenMS::MSSpectrum
The representation of a 1D spectrum.
Definition:
MSSpectrum.h:70
OpenMS
Main OpenMS namespace.
Definition:
FeatureDeconvolution.h:47
OpenMS::RNPxlMarkerIonExtractor
Definition:
RNPxlMarkerIonExtractor.h:47
OpenMS::RNPxlMarkerIonExtractor::MarkerIonsType
std::map< String, std::vector< std::pair< double, double > > > MarkerIonsType
name to mass-intensity pair
Definition:
RNPxlMarkerIonExtractor.h:49
OpenMS::RNPxlMarkerIonExtractor::extractMarkerIons
static MarkerIonsType extractMarkerIons(const PeakSpectrum &s, const double marker_tolerance)
extract an annotate RNA marker ions
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