SvmTheoreticalSpectrumGenerator.h File Reference

#include <OpenMS/config.h>
#include <OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h>
#include <OpenMS/ANALYSIS/SVM/SVMWrapper.h>
#include <OpenMS/KERNEL/StandardDeclarations.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/KERNEL/MSSpectrum.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <boost/random/mersenne_twister.hpp>

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Classes
class	SvmTheoreticalSpectrumGenerator
	Simulates MS2 spectra with support vector machines. More...
struct	SvmTheoreticalSpectrumGenerator::IonType
	nested class More...
struct	SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
	Simple container storing the model parameters required for simulation. More...
struct	SvmTheoreticalSpectrumGenerator::DescriptorSet
	A set of descriptors for a single training row. More...

Namespaces
	OpenMS
	Main OpenMS namespace.

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Class Documentation

OpenMS::SvmTheoreticalSpectrumGenerator::SvmModelParameterSet

struct OpenMS::SvmTheoreticalSpectrumGenerator::SvmModelParameterSet

Simple container storing the model parameters required for simulation.

Collaboration diagram for SvmTheoreticalSpectrumGenerator::SvmModelParameterSet:

Class Members
vector< shared_ptr< SVMWrapper > >	class_models
map< pair< IonType, Size >, vector< vector< double > > >	conditional_prob
vector< double >	feature_max
vector< double >	feature_min
vector< double >	intensity_bin_boarders
vector< double >	intensity_bin_values
vector< IonType >	ion_types
Size	number_intensity_levels
Size	number_regions
vector< shared_ptr< SVMWrapper > >	reg_models
double	scaling_lower
double	scaling_upper
map< IonType, vector< IonType > >	secondary_types
map< ResidueType, double >	static_intensities

OpenMS::SvmTheoreticalSpectrumGenerator::DescriptorSet

struct OpenMS::SvmTheoreticalSpectrumGenerator::DescriptorSet

A set of descriptors for a single training row.

Collaboration diagram for SvmTheoreticalSpectrumGenerator::DescriptorSet:

Class Members
typedef vector< svm_node >	DescriptorSetType

Class Members
DescriptorSetType	descriptors