85 void correctMZ(
const std::map<String, OpenMS::MRMFeatureFinderScoring::MRMTransitionGroupType *>& transition_group_map,
87 std::vector< OpenSwath::SwathMap > & swath_maps);
104 void correctIM(
const std::map<String, OpenMS::MRMFeatureFinderScoring::MRMTransitionGroupType *> & transition_group_map,
106 const std::vector< OpenSwath::SwathMap > & swath_maps,
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:93
A more convenient string class.
Definition: String.h:60
A class containing correction functions for Swath MS maps.
Definition: SwathMapMassCorrection.h:54
bool mz_extraction_window_ppm_
Definition: SwathMapMassCorrection.h:111
double im_extraction_window_
Definition: SwathMapMassCorrection.h:113
String mz_correction_function_
Definition: SwathMapMassCorrection.h:114
~SwathMapMassCorrection() override=default
Destructor.
String debug_mz_file_
Definition: SwathMapMassCorrection.h:117
void correctIM(const std::map< String, OpenMS::MRMFeatureFinderScoring::MRMTransitionGroupType * > &transition_group_map, const OpenSwath::LightTargetedExperiment &targeted_exp, const std::vector< OpenSwath::SwathMap > &swath_maps, TransformationDescription &im_trafo)
Correct the ion mobility values of a SWATH map based on the RT-normalization peptides.
double mz_extraction_window_
Definition: SwathMapMassCorrection.h:110
bool ms1_im_
Definition: SwathMapMassCorrection.h:112
String im_correction_function_
Definition: SwathMapMassCorrection.h:115
void updateMembers_() override
Synchronize members with param class.
String debug_im_file_
Definition: SwathMapMassCorrection.h:116
void correctMZ(const std::map< String, OpenMS::MRMFeatureFinderScoring::MRMTransitionGroupType * > &transition_group_map, const OpenSwath::LightTargetedExperiment &targeted_exp, std::vector< OpenSwath::SwathMap > &swath_maps)
Correct the m/z values of a SWATH map based on the RT-normalization peptides.
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
Definition: TransitionExperiment.h:207