OpenMS  2.8.0
AbsoluteQuantitation Member List

This is the complete list of members for AbsoluteQuantitation, including all inherited members.

AbsoluteQuantitation()AbsoluteQuantitation
applyCalibration(const Feature &component, const Feature &IS_component, const String &feature_name, const String &transformation_model, const Param &transformation_model_params)AbsoluteQuantitation
calculateBias(const double &actual_concentration, const double &calculated_concentration)AbsoluteQuantitation
calculateBiasAndR(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params, std::vector< double > &biases, double &correlation_coefficient)AbsoluteQuantitation
calculateRatio(const Feature &component_1, const Feature &component_2, const String &feature_name)AbsoluteQuantitation
check_defaults_DefaultParamHandlerprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
extractComponents_(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const std::vector< size_t > &component_concentrations_indices)AbsoluteQuantitationprotected
fitCalibration(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params)AbsoluteQuantitation
getDefaults() constDefaultParamHandler
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getQuantMethods()AbsoluteQuantitation
getQuantMethodsAsMap()AbsoluteQuantitation
getSubsections() constDefaultParamHandler
jackknifeOutlierCandidate_(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params)AbsoluteQuantitationprotected
max_bias_AbsoluteQuantitationprivate
max_iters_AbsoluteQuantitationprivate
min_correlation_coefficient_AbsoluteQuantitationprivate
min_points_AbsoluteQuantitationprivate
operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
optimization_method_AbsoluteQuantitationprivate
optimizeCalibrationCurveIterative(std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params, Param &optimized_params)AbsoluteQuantitation
optimizeCalibrationCurves(std::map< String, std::vector< AbsoluteQuantitationStandards::featureConcentration >> &components_concentrations)AbsoluteQuantitation
optimizeSingleCalibrationCurve(const String &component_name, std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations)AbsoluteQuantitation
outlier_detection_method_AbsoluteQuantitationprivate
param_DefaultParamHandlerprotected
quant_methods_AbsoluteQuantitationprivate
quantifyComponents(FeatureMap &unknowns)AbsoluteQuantitation
residualOutlierCandidate_(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params)AbsoluteQuantitationprotected
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setQuantMethods(std::vector< AbsoluteQuantitationMethod > &quant_methods)AbsoluteQuantitation
subsections_DefaultParamHandlerprotected
updateMembers_() overrideAbsoluteQuantitationprivatevirtual
use_chauvenet_AbsoluteQuantitationprivate
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~AbsoluteQuantitation() overrideAbsoluteQuantitation
~DefaultParamHandler()DefaultParamHandlervirtual