BayesianProteinInferenceAlgorithm Member List

This is the complete list of members for BayesianProteinInferenceAlgorithm, including all inherited members.

BayesianProteinInferenceAlgorithm(unsigned int debug_lvl=0)	BayesianProteinInferenceAlgorithm	explicit
check_defaults_	DefaultParamHandler	protected
checkConvertAndFilterPepHits_	BayesianProteinInferenceAlgorithm	private
CMD enum value	ProgressLogger
current_logger_	ProgressLogger	mutableprotected
debug_lvl_	BayesianProteinInferenceAlgorithm	private
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
endProgress() const	ProgressLogger
error_name_	DefaultParamHandler	protected
getDefaults() const	DefaultParamHandler
getLogType() const	ProgressLogger
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
GUI enum value	ProgressLogger
inferPosteriorProbabilities(std::vector< ProteinIdentification > &proteinIDs, std::vector< PeptideIdentification > &peptideIDs, bool greedy_group_resolution, std::optional< const ExperimentalDesign > exp_des=std::optional< const ExperimentalDesign >())	BayesianProteinInferenceAlgorithm
inferPosteriorProbabilities(ConsensusMap &cmap, bool greedy_group_resolution, std::optional< const ExperimentalDesign > exp_des=std::optional< const ExperimentalDesign >())	BayesianProteinInferenceAlgorithm
inferPosteriorProbabilities_(Internal::IDBoostGraph &ibg)	BayesianProteinInferenceAlgorithm	private
initGridSearchFromParams_(std::vector< double > &alpha_search, std::vector< double > &beta_search, std::vector< double > &gamma_search)	BayesianProteinInferenceAlgorithm	private
last_invoke_	ProgressLogger	mutableprotected
LogType enum name	ProgressLogger
logTypeToFactoryName_(LogType type)	ProgressLogger	protectedstatic
nextProgress() const	ProgressLogger
NONE enum value	ProgressLogger
OpenMS::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)	ProgressLogger
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
recursion_depth_	ProgressLogger	protectedstatic
resetProteinScores_(ProteinIdentification &protein_id, bool keep_old_as_prior)	BayesianProteinInferenceAlgorithm	private
setLogType(LogType type) const	ProgressLogger
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setProgress(SignedSize value) const	ProgressLogger
setScoreTypeAndSettings_(ProteinIdentification &proteinIDs)	BayesianProteinInferenceAlgorithm	private
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
subsections_	DefaultParamHandler	protected
type_	ProgressLogger	mutableprotected
updateMembers_() override	BayesianProteinInferenceAlgorithm	virtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~BayesianProteinInferenceAlgorithm() override=default	BayesianProteinInferenceAlgorithm
~DefaultParamHandler()	DefaultParamHandler	virtual
~ProgressLogger()	ProgressLogger	virtual