OpenMS  2.8.0
CompNovoIonScoring Member List

This is the complete list of members for CompNovoIonScoring, including all inherited members.

addSingleChargedIons_(Map< double, IonScore > &ion_scores, PeakSpectrum &CID_spec)CompNovoIonScoringBaseprotected
check_defaults_DefaultParamHandlerprotected
CHILD enum valueCompNovoIonScoringBase
classifyIsotopes_(const PeakSpectrum &spec, PeakSpectrum::ConstIterator it) constCompNovoIonScoringBaseprotected
CompNovoIonScoring()CompNovoIonScoring
CompNovoIonScoring(const CompNovoIonScoring &source)CompNovoIonScoring
CompNovoIonScoringBase()CompNovoIonScoringBase
CompNovoIonScoringBase(const CompNovoIonScoringBase &source)CompNovoIonScoringBase
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
fragment_mass_tolerance_CompNovoIonScoringBaseprotected
getDefaults() constDefaultParamHandler
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
initIsotopeDistributions_()CompNovoIonScoringBaseprotected
IonScore typedefCompNovoIonScoring
isotope_distributions_CompNovoIonScoringBaseprotected
IsotopeType typedefCompNovoIonScoring
LONE enum valueCompNovoIonScoringBase
operator=(const CompNovoIonScoring &source)CompNovoIonScoring
OpenMS::CompNovoIonScoringBase::operator=(const CompNovoIonScoringBase &source)CompNovoIonScoringBase
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
PARENT enum valueCompNovoIonScoringBase
scoreETDFeatures_(Size charge, double precursor_weight, Map< double, IonScore > &CID_nodes, const PeakSpectrum &CID_orig_spec, const PeakSpectrum &ETD_orig_spec)CompNovoIonScoringprotected
scoreIsotopes(const PeakSpectrum &CID_spec, PeakSpectrum::ConstIterator it, Size charge)CompNovoIonScoringBase
scoreIsotopes_(const PeakSpectrum &spec, PeakSpectrum::ConstIterator it, Map< double, IonScore > &CID_nodes, Size charge=1)CompNovoIonScoringBaseprotected
scoreSpectra(Map< double, IonScore > &CID_ion_scores, PeakSpectrum &CID_spec, PeakSpectrum &ETD_spec, double precursor_weight, Size charge)CompNovoIonScoring
scoreWitnessSet_(Size charge, double precursor_weight, Map< double, IonScore > &CID_nodes, const PeakSpectrum &CID_orig_spec) overrideCompNovoIonScoringprotectedvirtual
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
subsections_DefaultParamHandlerprotected
updateMembers_() overrideCompNovoIonScoringBaseprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~CompNovoIonScoring() overrideCompNovoIonScoring
~CompNovoIonScoringBase() overrideCompNovoIonScoringBase
~DefaultParamHandler()DefaultParamHandlervirtual