This is the complete list of members for ConfidenceScoring, including all inherited members.
| chooseDecoys_() | ConfidenceScoring | protected |
| CMD enum value | ProgressLogger | |
| ConfidenceScoring(bool test_mode_=false) | ConfidenceScoring | explicit |
| current_logger_ | ProgressLogger | mutableprotected |
| decoy_index_ | ConfidenceScoring | protected |
| endProgress() const | ProgressLogger | |
| getAssayRT_(const TargetedExperiment::Peptide &assay) | ConfidenceScoring | protected |
| getLogType() const | ProgressLogger | |
| glm_ | ConfidenceScoring | protected |
| GUI enum value | ProgressLogger | |
| initialize(const TargetedExperiment &library, const Size n_decoys, const Size n_transitions, const TransformationDescription &rt_trafo) | ConfidenceScoring | inline |
| initializeGlm(double intercept, double rt_coef, double int_coef) | ConfidenceScoring | inline |
| last_invoke_ | ProgressLogger | mutableprotected |
| library_ | ConfidenceScoring | protected |
| LogType enum name | ProgressLogger | |
| logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
| manhattanDist_(DoubleList x, DoubleList y) | ConfidenceScoring | protected |
| n_decoys_ | ConfidenceScoring | protected |
| n_transitions_ | ConfidenceScoring | protected |
| nextProgress() const | ProgressLogger | |
| NONE enum value | ProgressLogger | |
| operator=(const ProgressLogger &other) | ProgressLogger | |
| ProgressLogger() | ProgressLogger | |
| ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
| recursion_depth_ | ProgressLogger | protectedstatic |
| rt_norm_ | ConfidenceScoring | protected |
| rt_trafo_ | ConfidenceScoring | protected |
| scoreAssay_(const TargetedExperiment::Peptide &assay, double feature_rt, DoubleList &feature_intensities, const std::set< String > &transition_ids=std::set< String >()) | ConfidenceScoring | protected |
| scoreFeature_(Feature &feature) | ConfidenceScoring | protected |
| scoreMap(FeatureMap &features) | ConfidenceScoring | inline |
| setLogType(LogType type) const | ProgressLogger | |
| setProgress(SignedSize value) const | ProgressLogger | |
| shuffler_ | ConfidenceScoring | protected |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| transition_map_ | ConfidenceScoring | protected |
| type_ | ProgressLogger | mutableprotected |
| ~ConfidenceScoring() override | ConfidenceScoring | inline |
| ~ProgressLogger() | ProgressLogger | virtual |
1.9.1