| apply(std::vector< PeptideIdentification > &ids, const std::map< String, String > &se_info, Size number_of_runs=0) | ConsensusIDAlgorithm | |
| apply(std::vector< PeptideIdentification > &ids, Size number_of_runs=0) | ConsensusIDAlgorithm | |
| apply_(std::vector< PeptideIdentification > &ids, const std::map< String, String > &se_info, SequenceGrouping &results) override | ConsensusIDAlgorithmSimilarity | privatevirtual |
| check_defaults_ | DefaultParamHandler | protected |
| compareChargeStates_(Int &recorded_charge, Int new_charge, const AASequence &peptide) | ConsensusIDAlgorithm | protected |
| ConsensusIDAlgorithm() | ConsensusIDAlgorithm | protected |
| ConsensusIDAlgorithm(const ConsensusIDAlgorithm &) | ConsensusIDAlgorithm | private |
| ConsensusIDAlgorithmSimilarity() | ConsensusIDAlgorithmSimilarity | protected |
| ConsensusIDAlgorithmSimilarity(const ConsensusIDAlgorithmSimilarity &) | ConsensusIDAlgorithmSimilarity | private |
| considered_hits_ | ConsensusIDAlgorithm | protected |
| count_empty_ | ConsensusIDAlgorithm | protected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| error_name_ | DefaultParamHandler | protected |
| getDefaults() const | DefaultParamHandler | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSimilarity_(AASequence seq1, AASequence seq2)=0 | ConsensusIDAlgorithmSimilarity | protectedpure virtual |
| getSubsections() const | DefaultParamHandler | |
| keep_old_scores_ | ConsensusIDAlgorithm | protected |
| min_support_ | ConsensusIDAlgorithm | protected |
| number_of_runs_ | ConsensusIDAlgorithm | protected |
| operator=(const ConsensusIDAlgorithmSimilarity &) | ConsensusIDAlgorithmSimilarity | private |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| SequenceGrouping typedef | ConsensusIDAlgorithm | protected |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| similarities_ | ConsensusIDAlgorithmSimilarity | protected |
| SimilarityCache typedef | ConsensusIDAlgorithmSimilarity | protected |
| subsections_ | DefaultParamHandler | protected |
| updateMembers_() override | ConsensusIDAlgorithm | protectedvirtual |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="") | DefaultParamHandler | static |
| ~ConsensusIDAlgorithm() override | ConsensusIDAlgorithm | |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
1.9.1
