OpenMS  2.8.0
ConsensusMap Member List

This is the complete list of members for ConsensusMap, including all inherited members.

addMetaValues(const MetaInfoInterface &from)MetaInfoInterface
appendColumns(const ConsensusMap &rhs)ConsensusMap
appendRows(const ConsensusMap &rhs)ConsensusMap
applyFunctionOnPeptideHits(T &&f, bool include_unassigned=true)MapUtilities< ConsensusMap >inline
applyFunctionOnPeptideHits(T &&f, bool include_unassigned=true) constMapUtilities< ConsensusMap >inline
applyFunctionOnPeptideHits_(std::vector< PeptideIdentification > &idvec, T &&f)MapUtilities< ConsensusMap >inlineprivate
applyFunctionOnPeptideHits_(const std::vector< PeptideIdentification > &idvec, T &&f) constMapUtilities< ConsensusMap >inlineprivate
applyFunctionOnPeptideIDs(T &&f, bool include_unassigned=true)MapUtilities< ConsensusMap >inline
applyFunctionOnPeptideIDs(T &&f, bool include_unassigned=true) constMapUtilities< ConsensusMap >inline
applyFunctionOnPeptideIDs_(std::vector< PeptideIdentification > &idvec, T &&f)MapUtilities< ConsensusMap >inlineprivate
applyFunctionOnPeptideIDs_(const std::vector< PeptideIdentification > &idvec, T &&f) constMapUtilities< ConsensusMap >inlineprivate
applyMemberFunction(Size(Type::*member_function)())ConsensusMapinline
applyMemberFunction(Size(Type::*member_function)() const) constConsensusMapinline
assign(const RangeManager< RangeBasesOther... > &rhs)RangeManager< RangeBases... >inline
assignUnsafe(const RangeManager< RangeBasesOther... > &rhs)RangeManager< RangeBases... >inline
Base typedefConsensusMap
clear(bool clear_meta_data=true)ConsensusMap
clearMetaInfo()MetaInfoInterface
clearRanges()RangeManager< RangeBases... >inline
clearUniqueId()UniqueIdInterfaceinline
column_description_ConsensusMapprotected
ColumnHeaders typedefConsensusMap
ConsensusMap()ConsensusMap
ConsensusMap(const ConsensusMap &source)ConsensusMap
ConsensusMap(Base::size_type n)ConsensusMapexplicit
ConstIterator typedefConsensusMap
ConstReverseIterator typedefConsensusMap
containsAll(const RangeManager< RangeBasesOther... > &rhs) constRangeManager< RangeBases... >inline
createIfNotExists_()MetaInfoInterfaceinlineprotected
data_processing_ConsensusMapprotected
DocumentIdentifier()DocumentIdentifier
DocumentIdentifier(const DocumentIdentifier &)=defaultDocumentIdentifier
DocumentIdentifier(DocumentIdentifier &&)=defaultDocumentIdentifier
ensureUniqueId()UniqueIdInterfaceinline
experiment_type_ConsensusMapprotected
extend(const RangeManager< RangeBasesOther... > &rhs)RangeManager< RangeBases... >inline
extendUnsafe(const RangeManager< RangeBasesOther... > &rhs)RangeManager< RangeBases... >inline
FeatureType typedefConsensusMap
file_path_DocumentIdentifierprotected
file_type_DocumentIdentifierprotected
for_each_base_(Visitor &&visitor)RangeManager< RangeBases... >inlineprotected
for_each_base_(Visitor &&visitor) constRangeManager< RangeBases... >inlineprotected
getBase_() constUniqueIdIndexer< ConsensusMap >inlineprotected
getBase_()UniqueIdIndexer< ConsensusMap >inlineprotected
getColumnHeaders() constConsensusMap
getColumnHeaders()ConsensusMap
getDataProcessing() constConsensusMap
getDataProcessing()ConsensusMap
getExperimentType() constConsensusMap
getIdentifier() constDocumentIdentifier
getKeys(std::vector< String > &keys) constMetaInfoInterface
getKeys(std::vector< UInt > &keys) constMetaInfoInterface
getLoadedFilePath() constDocumentIdentifier
getLoadedFileType() constDocumentIdentifier
getMetaValue(const String &name, const DataValue &default_value=DataValue::EMPTY) constMetaInfoInterface
getMetaValue(UInt index, const DataValue &default_value=DataValue::EMPTY) constMetaInfoInterface
getPrimaryMSRunPath(StringList &toFill) constConsensusMap
getProteinIdentifications() constConsensusMap
getProteinIdentifications()ConsensusMap
getRange() constRangeManagerContainer< RangeRT, RangeMZ, RangeIntensity >inline
getRange()RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity >inline
getRangeForDim(MSDim dim)RangeManager< RangeBases... >inline
getUnassignedPeptideIdentifications() constConsensusMap
getUnassignedPeptideIdentifications()ConsensusMap
getUniqueId() constUniqueIdInterfaceinline
hasInvalidUniqueId() constUniqueIdInterfaceinline
hasRange() constRangeManager< RangeBases... >inline
hasValidUniqueId() constUniqueIdInterfaceinline
id_DocumentIdentifierprotected
INVALID enum valueUniqueIdInterface
isMapConsistent(Logger::LogStream *stream=nullptr) constConsensusMap
isMetaEmpty() constMetaInfoInterface
isValid(UInt64 unique_id)UniqueIdInterfaceinlinestatic
Iterator typedefConsensusMap
meta_MetaInfoInterfaceprotected
MetaInfoInterface()MetaInfoInterface
MetaInfoInterface(const MetaInfoInterface &rhs)MetaInfoInterface
MetaInfoInterface(MetaInfoInterface &&) noexceptMetaInfoInterface
metaRegistry()MetaInfoInterfacestatic
metaValueExists(const String &name) constMetaInfoInterface
metaValueExists(UInt index) constMetaInfoInterface
operator!=(const ConsensusMap &rhs) constConsensusMap
OpenMS::MetaInfoInterface::operator!=(const MetaInfoInterface &rhs) constMetaInfoInterface
operator=(const ConsensusMap &source)ConsensusMap
OpenMS::MetaInfoInterface::operator=(const MetaInfoInterface &rhs)MetaInfoInterface
OpenMS::MetaInfoInterface::operator=(MetaInfoInterface &&) noexceptMetaInfoInterface
OpenMS::DocumentIdentifier::operator=(const DocumentIdentifier &)=defaultDocumentIdentifier
OpenMS::DocumentIdentifier::operator=(DocumentIdentifier &&) &=defaultDocumentIdentifier
OpenMS::UniqueIdInterface::operator=(UniqueIdInterface const &rhs)=defaultUniqueIdInterface
OpenMS::UniqueIdInterface::operator=(UniqueIdInterface &&) &=defaultUniqueIdInterface
operator==(const ConsensusMap &rhs) constConsensusMap
OpenMS::MetaInfoInterface::operator==(const MetaInfoInterface &rhs) constMetaInfoInterface
RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity >::operator==(const RangeManager &rhs) constRangeManager< RangeBases... >inline
OpenMS::DocumentIdentifier::operator==(const DocumentIdentifier &rhs) constDocumentIdentifier
OpenMS::UniqueIdInterface::operator==(UniqueIdInterface const &rhs) constUniqueIdInterfaceinline
printRange(std::ostream &out) constRangeManager< RangeBases... >inline
privvec typedefConsensusMap
protein_identifications_ConsensusMapprotected
RangeManagerContainerType typedefConsensusMap
RangeManagerType typedefConsensusMap
removeMetaValue(const String &name)MetaInfoInterface
removeMetaValue(UInt index)MetaInfoInterface
resolveUniqueIdConflicts()UniqueIdIndexer< ConsensusMap >inline
ReverseIterator typedefConsensusMap
scaleBy(const double factor)RangeManager< RangeBases... >inline
setColumnHeaders(const ColumnHeaders &column_description)ConsensusMap
setDataProcessing(const std::vector< DataProcessing > &processing_method)ConsensusMap
setExperimentType(const String &experiment_type)ConsensusMap
setIdentifier(const String &id)DocumentIdentifier
setLoadedFilePath(const String &file_name)DocumentIdentifier
setLoadedFileType(const String &file_name)DocumentIdentifier
setMetaValue(const String &name, const DataValue &value)MetaInfoInterface
setMetaValue(UInt index, const DataValue &value)MetaInfoInterface
setPrimaryMSRunPath(const StringList &s)ConsensusMap
setPrimaryMSRunPath(const StringList &s, MSExperiment &e)ConsensusMap
setProteinIdentifications(const std::vector< ProteinIdentification > &protein_identifications)ConsensusMap
setProteinIdentifications(std::vector< ProteinIdentification > &&protein_identifications)ConsensusMap
setUnassignedPeptideIdentifications(const std::vector< PeptideIdentification > &unassigned_peptide_identifications)ConsensusMap
setUniqueId()UniqueIdInterfaceinline
setUniqueId(UInt64 rhs)UniqueIdInterfaceinline
setUniqueId(const String &rhs)UniqueIdInterface
sortByIntensity(bool reverse=false)ConsensusMap
sortByMaps()ConsensusMap
sortByMZ()ConsensusMap
sortByPosition()ConsensusMap
sortByQuality(bool reverse=false)ConsensusMap
sortByRT()ConsensusMap
sortBySize()ConsensusMap
sortPeptideIdentificationsByMapIndex()ConsensusMap
split(SplitMeta mode=SplitMeta::DISCARD) constConsensusMap
SplitMeta enum nameConsensusMap
static_for_each_base_(Visitor &&visitor)RangeManager< RangeBases... >inlineprotectedstatic
swap(ConsensusMap &from)ConsensusMap
OpenMS::MetaInfoInterface::swap(MetaInfoInterface &rhs)MetaInfoInterface
OpenMS::DocumentIdentifier::swap(DocumentIdentifier &from)DocumentIdentifier
OpenMS::UniqueIdInterface::swap(UniqueIdInterface &from)UniqueIdInterfaceinline
UniqueIdIndexer< ConsensusMap >::swap(UniqueIdIndexer &rhs)UniqueIdIndexer< ConsensusMap >inline
unassigned_peptide_identifications_ConsensusMapprotected
unique_id_UniqueIdInterfaceprotected
uniqueid_to_index_UniqueIdIndexer< ConsensusMap >mutableprotected
UniqueIdInterface()UniqueIdInterfaceinline
UniqueIdInterface(const UniqueIdInterface &rhs)=defaultUniqueIdInterface
UniqueIdInterface(UniqueIdInterface &&rhs)=defaultUniqueIdInterface
UniqueIdMap typedefUniqueIdIndexer< ConsensusMap >
uniqueIdToIndex(UInt64 unique_id) constUniqueIdIndexer< ConsensusMap >inline
updateRanges() overrideConsensusMapvirtual
updateUniqueIdToIndex() constUniqueIdIndexer< ConsensusMap >inline
~ConsensusMap() overrideConsensusMap
~DocumentIdentifier()DocumentIdentifiervirtual
~MetaInfoInterface()MetaInfoInterface
~UniqueIdInterface()=defaultUniqueIdInterfacevirtual
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