OpenMS  2.8.0
DBSuitability Member List

This is the complete list of members for DBSuitability, including all inherited members.

appendDecoys_(std::vector< FASTAFile::FASTAEntry > &fasta) constDBSuitabilityprivate
calculateCorrectionFactor_(const SuitabilityData &data, const SuitabilityData &data_sampled, double sampling_rate) constDBSuitabilityprivate
calculateSuitability_(const std::vector< PeptideIdentification > &pep_ids, SuitabilityData &data) constDBSuitabilityprivate
check_defaults_DefaultParamHandlerprotected
checkScoreBetterThanThreshold_(const PeptideHit &hit, double threshold, bool higher_score_better) constDBSuitabilityprivate
compute(std::vector< PeptideIdentification > &&pep_ids, const MSExperiment &exp, const std::vector< FASTAFile::FASTAEntry > &original_fasta, const std::vector< FASTAFile::FASTAEntry > &novo_fasta, const ProteinIdentification::SearchParameters &search_params)DBSuitability
DBSuitability()DBSuitability
DBSuitability_friend classDBSuitabilityfriend
decoy_pattern_DBSuitabilityprivate
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
extractScore_(const PeptideHit &pep_hit) constDBSuitabilityprivate
extractSearchAdapterInfoFromMetaValues_(const ProteinIdentification::SearchParameters &search_params) constDBSuitabilityprivate
getDecoyCutOff_(const std::vector< PeptideIdentification > &pep_ids, double reranking_cutoff_percentile) constDBSuitabilityprivate
getDecoyDiff_(const PeptideIdentification &pep_id) constDBSuitabilityprivate
getDefaults() constDefaultParamHandler
getIndexWithMedianNovoHits_(const std::vector< SuitabilityData > &data) constDBSuitabilityprivate
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getResults() constDBSuitability
getScoreMatchingFDR_(const std::vector< PeptideIdentification > &pep_ids, double FDR, String score_name, bool higher_score_better) constDBSuitabilityprivate
getSubsampledFasta_(const std::vector< FASTAFile::FASTAEntry > &fasta_data, double subsampling_rate) constDBSuitabilityprivate
getSubsections() constDefaultParamHandler
isNovoHit_(const PeptideHit &hit) constDBSuitabilityprivate
numberOfUniqueProteins_(const std::vector< PeptideIdentification > &peps, UInt number_of_hits=1) constDBSuitabilityprivate
operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
results_DBSuitabilityprivate
runIdentificationSearch_(const MSExperiment &exp, const std::vector< FASTAFile::FASTAEntry > &fasta_data, const String &adapter_name, Param &parameters) constDBSuitabilityprivate
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
subsections_DefaultParamHandlerprotected
updateMembers_()DefaultParamHandlerprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeIniFile_(const Param &parameters, const String &filename) constDBSuitabilityprivate
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DBSuitability() override=defaultDBSuitability
~DefaultParamHandler()DefaultParamHandlervirtual