| addSynonym(const String &synonym) | DigestionEnzyme | |
| c_term_gain_ | DigestionEnzymeProtein | protected |
| cleavage_regex_ | DigestionEnzyme | protected |
| comet_id_ | DigestionEnzymeProtein | protected |
| crux_id_ | DigestionEnzymeProtein | protected |
| DigestionEnzyme(const DigestionEnzyme &)=default | DigestionEnzyme | |
| DigestionEnzyme(DigestionEnzyme &&)=default | DigestionEnzyme | |
| DigestionEnzyme(const String &name, const String &cleavage_regex, const std::set< String > &synonyms=std::set< String >(), String regex_description="") | DigestionEnzyme | explicit |
| DigestionEnzyme(const String &name, String cut_before, const String &nocut_after="", String sense="C", const std::set< String > &synonyms=std::set< String >(), String regex_description="") | DigestionEnzyme | explicit |
| DigestionEnzyme() | DigestionEnzyme | protected |
| DigestionEnzymeProtein() | DigestionEnzymeProtein | |
| DigestionEnzymeProtein(const DigestionEnzyme &d) | DigestionEnzymeProtein | explicit |
| DigestionEnzymeProtein(const DigestionEnzymeProtein &)=default | DigestionEnzymeProtein | |
| DigestionEnzymeProtein(DigestionEnzymeProtein &&)=default | DigestionEnzymeProtein | |
| DigestionEnzymeProtein(const String &name, const String &cleavage_regex, const std::set< String > &synonyms=std::set< String >(), String regex_description="", EmpiricalFormula n_term_gain=EmpiricalFormula("H"), EmpiricalFormula c_term_gain=EmpiricalFormula("OH"), String psi_id="", String xtandem_id="", Int comet_id=-1, String crux_id="", Int msgf_id=-1, Int omssa_id=-1) | DigestionEnzymeProtein | explicit |
| getCometID() const | DigestionEnzymeProtein | |
| getCruxID() const | DigestionEnzymeProtein | |
| getCTermGain() const | DigestionEnzymeProtein | |
| getMSGFID() const | DigestionEnzymeProtein | |
| getName() const | DigestionEnzyme | |
| getNTermGain() const | DigestionEnzymeProtein | |
| getOMSSAID() const | DigestionEnzymeProtein | |
| getPSIID() const | DigestionEnzymeProtein | |
| getRegEx() const | DigestionEnzyme | |
| getRegExDescription() const | DigestionEnzyme | |
| getSynonyms() const | DigestionEnzyme | |
| getXTandemID() const | DigestionEnzymeProtein | |
| msgf_id_ | DigestionEnzymeProtein | protected |
| n_term_gain_ | DigestionEnzymeProtein | protected |
| name_ | DigestionEnzyme | protected |
| omssa_id_ | DigestionEnzymeProtein | protected |
| operator!=(const DigestionEnzymeProtein &enzyme) const | DigestionEnzymeProtein | |
| operator!=(const String &cleavage_regex) const | DigestionEnzymeProtein | |
| OpenMS::DigestionEnzyme::operator!=(const DigestionEnzyme &enzyme) const | DigestionEnzyme | |
| operator<(const DigestionEnzymeProtein &enzyme) const | DigestionEnzymeProtein | |
| OpenMS::DigestionEnzyme::operator<(const DigestionEnzyme &enzyme) const | DigestionEnzyme | |
| operator<<(std::ostream &os, const DigestionEnzymeProtein &enzyme) | DigestionEnzymeProtein | friend |
| operator=(const DigestionEnzymeProtein &)=default | DigestionEnzymeProtein | |
| operator=(DigestionEnzymeProtein &&) &=default | DigestionEnzymeProtein | |
| OpenMS::DigestionEnzyme::operator=(const DigestionEnzyme &)=default | DigestionEnzyme | |
| OpenMS::DigestionEnzyme::operator=(DigestionEnzyme &&) &=default | DigestionEnzyme | |
| operator==(const DigestionEnzymeProtein &enzyme) const | DigestionEnzymeProtein | |
| operator==(const String &cleavage_regex) const | DigestionEnzymeProtein | |
| OpenMS::DigestionEnzyme::operator==(const DigestionEnzyme &enzyme) const | DigestionEnzyme | |
| psi_id_ | DigestionEnzymeProtein | protected |
| regex_description_ | DigestionEnzyme | protected |
| setCometID(Int value) | DigestionEnzymeProtein | |
| setCruxID(const String &value) | DigestionEnzymeProtein | |
| setCTermGain(const EmpiricalFormula &value) | DigestionEnzymeProtein | |
| setMSGFID(Int value) | DigestionEnzymeProtein | |
| setName(const String &name) | DigestionEnzyme | |
| setNTermGain(const EmpiricalFormula &value) | DigestionEnzymeProtein | |
| setOMSSAID(Int value) | DigestionEnzymeProtein | |
| setPSIID(const String &value) | DigestionEnzymeProtein | |
| setRegEx(const String &cleavage_regex) | DigestionEnzyme | |
| setRegExDescription(const String &value) | DigestionEnzyme | |
| setSynonyms(const std::set< String > &synonyms) | DigestionEnzyme | |
| setValueFromFile(const String &key, const String &value) override | DigestionEnzymeProtein | virtual |
| setXTandemID(const String &value) | DigestionEnzymeProtein | |
| synonyms_ | DigestionEnzyme | protected |
| xtandem_id_ | DigestionEnzymeProtein | protected |
| ~DigestionEnzyme() | DigestionEnzyme | virtual |
| ~DigestionEnzymeProtein() override | DigestionEnzymeProtein | |
1.9.1
