OpenMS  2.8.0
FalseDiscoveryRate Member List

This is the complete list of members for FalseDiscoveryRate, including all inherited members.

apply(std::vector< PeptideIdentification > &fwd_ids, std::vector< PeptideIdentification > &rev_ids) constFalseDiscoveryRate
apply(std::vector< PeptideIdentification > &id) constFalseDiscoveryRate
apply(std::vector< ProteinIdentification > &fwd_ids, std::vector< ProteinIdentification > &rev_ids) constFalseDiscoveryRate
apply(std::vector< ProteinIdentification > &ids) constFalseDiscoveryRate
applyBasic(std::vector< PeptideIdentification > &ids)FalseDiscoveryRate
applyBasic(ConsensusMap &cmap, bool use_unassigned_peptides=true)FalseDiscoveryRate
applyBasic(ProteinIdentification &id, bool groups_too=true)FalseDiscoveryRate
applyEstimated(std::vector< ProteinIdentification > &ids) constFalseDiscoveryRate
applyEvaluateProteinIDs(const std::vector< ProteinIdentification > &ids, double pepCutoff=1.0, UInt fpCutoff=50, double diffWeight=0.2) constFalseDiscoveryRate
applyEvaluateProteinIDs(const ProteinIdentification &ids, double pepCutoff=1.0, UInt fpCutoff=50, double diffWeight=0.2) constFalseDiscoveryRate
applyEvaluateProteinIDs(ScoreToTgtDecLabelPairs &score_to_tgt_dec_fraction_pairs, double pepCutoff=1.0, UInt fpCutoff=50, double diffWeight=0.2) constFalseDiscoveryRate
applyPickedProteinFDR(ProteinIdentification &id, String decoy_string="", bool prefix=true, bool groups_too=true)FalseDiscoveryRate
applyToObservationMatches(IdentificationData &id_data, IdentificationData::ScoreTypeRef score_ref) constFalseDiscoveryRate
calculateEstimatedQVal_(std::map< double, double > &scores_to_FDR, ScoreToTgtDecLabelPairs &scores_labels, bool higher_score_better) constFalseDiscoveryRateprivate
calculateFDRBasic_(std::map< double, double > &scores_to_FDR, ScoreToTgtDecLabelPairs &scores_labels, bool qvalue, bool higher_score_better) constFalseDiscoveryRateprivate
calculateFDRs_(std::map< double, double > &score_to_fdr, std::vector< double > &target_scores, std::vector< double > &decoy_scores, bool q_value, bool higher_score_better) constFalseDiscoveryRateprivate
check_defaults_DefaultParamHandlerprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
diffEstimatedEmpirical(const ScoreToTgtDecLabelPairs &scores_labels, double pepCutoff=1.0) constFalseDiscoveryRate
error_name_DefaultParamHandlerprotected
FalseDiscoveryRate()FalseDiscoveryRate
FalseDiscoveryRate(const FalseDiscoveryRate &)FalseDiscoveryRateprivate
getDefaults() constDefaultParamHandler
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
handleObservationMatch_(IdentificationData::ObservationMatchRef match_ref, IdentificationData::ScoreTypeRef score_ref, std::vector< double > &target_scores, std::vector< double > &decoy_scores, std::map< IdentificationData::IdentifiedMolecule, bool > &molecule_to_decoy, std::map< IdentificationData::ObservationMatchRef, double > &match_to_score) constFalseDiscoveryRateprivate
operator=(const FalseDiscoveryRate &)FalseDiscoveryRateprivate
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
rocN(const std::vector< PeptideIdentification > &ids, Size fp_cutoff) constFalseDiscoveryRate
rocN(const std::vector< PeptideIdentification > &ids, Size fp_cutoff, const String &identifier) constFalseDiscoveryRate
rocN(const ConsensusMap &ids, Size fp_cutoff) constFalseDiscoveryRate
rocN(const ConsensusMap &ids, Size fp_cutoff, const String &identifier) constFalseDiscoveryRate
rocN(const ScoreToTgtDecLabelPairs &scores_labels, Size fpCutoff=50) constFalseDiscoveryRate
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
subsections_DefaultParamHandlerprotected
trapezoidal_area(double x1, double x2, double y1, double y2) constFalseDiscoveryRateprivate
trapezoidal_area_xEqy(double exp1, double exp2, double act1, double act2) constFalseDiscoveryRateprivate
updateMembers_()DefaultParamHandlerprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual