addMetaValues(const MetaInfoInterface &from) | MetaInfoInterface | |
applyFunctionOnPeptideHits(T &&f, bool include_unassigned=true) | MapUtilities< FeatureMap > | inline |
applyFunctionOnPeptideHits(T &&f, bool include_unassigned=true) const | MapUtilities< FeatureMap > | inline |
applyFunctionOnPeptideHits_(std::vector< PeptideIdentification > &idvec, T &&f) | MapUtilities< FeatureMap > | inlineprivate |
applyFunctionOnPeptideHits_(const std::vector< PeptideIdentification > &idvec, T &&f) const | MapUtilities< FeatureMap > | inlineprivate |
applyFunctionOnPeptideIDs(T &&f, bool include_unassigned=true) | MapUtilities< FeatureMap > | inline |
applyFunctionOnPeptideIDs(T &&f, bool include_unassigned=true) const | MapUtilities< FeatureMap > | inline |
applyFunctionOnPeptideIDs_(std::vector< PeptideIdentification > &idvec, T &&f) | MapUtilities< FeatureMap > | inlineprivate |
applyFunctionOnPeptideIDs_(const std::vector< PeptideIdentification > &idvec, T &&f) const | MapUtilities< FeatureMap > | inlineprivate |
applyMemberFunction(Size(Type::*member_function)()) | FeatureMap | inline |
applyMemberFunction(Size(Type::*member_function)() const) const | FeatureMap | inline |
assign(const RangeManager< RangeBasesOther... > &rhs) | RangeManager< RangeBases... > | inline |
assignUnsafe(const RangeManager< RangeBasesOther... > &rhs) | RangeManager< RangeBases... > | inline |
Base typedef | FeatureMap | |
clear(bool clear_meta_data=true) | FeatureMap | |
clearMetaInfo() | MetaInfoInterface | |
clearRanges() | RangeManager< RangeBases... > | inline |
clearUniqueId() | UniqueIdInterface | inline |
ConstIterator typedef | FeatureMap | |
ConstReverseIterator typedef | FeatureMap | |
containsAll(const RangeManager< RangeBasesOther... > &rhs) const | RangeManager< RangeBases... > | inline |
createIfNotExists_() | MetaInfoInterface | inlineprotected |
data_processing_ | FeatureMap | protected |
DocumentIdentifier() | DocumentIdentifier | |
DocumentIdentifier(const DocumentIdentifier &)=default | DocumentIdentifier | |
DocumentIdentifier(DocumentIdentifier &&)=default | DocumentIdentifier | |
ensureUniqueId() | UniqueIdInterface | inline |
extend(const RangeManager< RangeBasesOther... > &rhs) | RangeManager< RangeBases... > | inline |
extendUnsafe(const RangeManager< RangeBasesOther... > &rhs) | RangeManager< RangeBases... > | inline |
FeatureMap() | FeatureMap | |
FeatureMap(const FeatureMap &source) | FeatureMap | |
FeatureMap(FeatureMap &&source) | FeatureMap | |
file_path_ | DocumentIdentifier | protected |
file_type_ | DocumentIdentifier | protected |
for_each_base_(Visitor &&visitor) | RangeManager< RangeBases... > | inlineprotected |
for_each_base_(Visitor &&visitor) const | RangeManager< RangeBases... > | inlineprotected |
getAnnotationStatistics() const | FeatureMap | |
getBase_() const | UniqueIdIndexer< FeatureMap > | inlineprotected |
getBase_() | UniqueIdIndexer< FeatureMap > | inlineprotected |
getDataProcessing() const | FeatureMap | |
getDataProcessing() | FeatureMap | |
getIdentificationData() const | FeatureMap | |
getIdentificationData() | FeatureMap | |
getIdentifier() const | DocumentIdentifier | |
getKeys(std::vector< String > &keys) const | MetaInfoInterface | |
getKeys(std::vector< UInt > &keys) const | MetaInfoInterface | |
getLoadedFilePath() const | DocumentIdentifier | |
getLoadedFileType() const | DocumentIdentifier | |
getMetaValue(const String &name, const DataValue &default_value=DataValue::EMPTY) const | MetaInfoInterface | |
getMetaValue(UInt index, const DataValue &default_value=DataValue::EMPTY) const | MetaInfoInterface | |
getPrimaryMSRunPath(StringList &toFill) const | FeatureMap | |
getProteinIdentifications() const | FeatureMap | |
getProteinIdentifications() | FeatureMap | |
getRange() const | RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity > | inline |
getRange() | RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity > | inline |
getRangeForDim(MSDim dim) | RangeManager< RangeBases... > | inline |
getUnassignedIDMatches() const | FeatureMap | |
getUnassignedPeptideIdentifications() const | FeatureMap | |
getUnassignedPeptideIdentifications() | FeatureMap | |
getUniqueId() const | UniqueIdInterface | inline |
hasInvalidUniqueId() const | UniqueIdInterface | inline |
hasRange() const | RangeManager< RangeBases... > | inline |
hasValidUniqueId() const | UniqueIdInterface | inline |
id_ | DocumentIdentifier | protected |
id_data_ | FeatureMap | protected |
INVALID enum value | UniqueIdInterface | |
isMetaEmpty() const | MetaInfoInterface | |
isValid(UInt64 unique_id) | UniqueIdInterface | inlinestatic |
Iterator typedef | FeatureMap | |
meta_ | MetaInfoInterface | protected |
MetaInfoInterface() | MetaInfoInterface | |
MetaInfoInterface(const MetaInfoInterface &rhs) | MetaInfoInterface | |
MetaInfoInterface(MetaInfoInterface &&) noexcept | MetaInfoInterface | |
metaRegistry() | MetaInfoInterface | static |
metaValueExists(const String &name) const | MetaInfoInterface | |
metaValueExists(UInt index) const | MetaInfoInterface | |
operator!=(const FeatureMap &rhs) const | FeatureMap | |
OpenMS::MetaInfoInterface::operator!=(const MetaInfoInterface &rhs) const | MetaInfoInterface | |
operator+(const FeatureMap &rhs) const | FeatureMap | |
operator+=(const FeatureMap &rhs) | FeatureMap | |
operator=(const FeatureMap &rhs) | FeatureMap | |
OpenMS::MetaInfoInterface::operator=(const MetaInfoInterface &rhs) | MetaInfoInterface | |
OpenMS::MetaInfoInterface::operator=(MetaInfoInterface &&) noexcept | MetaInfoInterface | |
OpenMS::DocumentIdentifier::operator=(const DocumentIdentifier &)=default | DocumentIdentifier | |
OpenMS::DocumentIdentifier::operator=(DocumentIdentifier &&) &=default | DocumentIdentifier | |
OpenMS::UniqueIdInterface::operator=(UniqueIdInterface const &rhs)=default | UniqueIdInterface | |
OpenMS::UniqueIdInterface::operator=(UniqueIdInterface &&) &=default | UniqueIdInterface | |
operator==(const FeatureMap &rhs) const | FeatureMap | |
OpenMS::MetaInfoInterface::operator==(const MetaInfoInterface &rhs) const | MetaInfoInterface | |
RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity >::operator==(const RangeManager &rhs) const | RangeManager< RangeBases... > | inline |
OpenMS::DocumentIdentifier::operator==(const DocumentIdentifier &rhs) const | DocumentIdentifier | |
OpenMS::UniqueIdInterface::operator==(UniqueIdInterface const &rhs) const | UniqueIdInterface | inline |
printRange(std::ostream &out) const | RangeManager< RangeBases... > | inline |
protein_identifications_ | FeatureMap | protected |
RangeManagerContainerType typedef | FeatureMap | |
RangeManagerType typedef | FeatureMap | |
removeMetaValue(const String &name) | MetaInfoInterface | |
removeMetaValue(UInt index) | MetaInfoInterface | |
resolveUniqueIdConflicts() | UniqueIdIndexer< FeatureMap > | inline |
ReverseIterator typedef | FeatureMap | |
scaleBy(const double factor) | RangeManager< RangeBases... > | inline |
setDataProcessing(const std::vector< DataProcessing > &processing_method) | FeatureMap | |
setIdentifier(const String &id) | DocumentIdentifier | |
setLoadedFilePath(const String &file_name) | DocumentIdentifier | |
setLoadedFileType(const String &file_name) | DocumentIdentifier | |
setMetaValue(const String &name, const DataValue &value) | MetaInfoInterface | |
setMetaValue(UInt index, const DataValue &value) | MetaInfoInterface | |
setPrimaryMSRunPath(const StringList &s) | FeatureMap | |
setPrimaryMSRunPath(const StringList &s, MSExperiment &e) | FeatureMap | |
setProteinIdentifications(const std::vector< ProteinIdentification > &protein_identifications) | FeatureMap | |
setUnassignedPeptideIdentifications(const std::vector< PeptideIdentification > &unassigned_peptide_identifications) | FeatureMap | |
setUniqueId() | UniqueIdInterface | inline |
setUniqueId(UInt64 rhs) | UniqueIdInterface | inline |
setUniqueId(const String &rhs) | UniqueIdInterface | |
sortByIntensity(bool reverse=false) | FeatureMap | |
sortByMZ() | FeatureMap | |
sortByOverallQuality(bool reverse=false) | FeatureMap | |
sortByPosition() | FeatureMap | |
sortByRT() | FeatureMap | |
static_for_each_base_(Visitor &&visitor) | RangeManager< RangeBases... > | inlineprotectedstatic |
swap(FeatureMap &from) | FeatureMap | |
OpenMS::MetaInfoInterface::swap(MetaInfoInterface &rhs) | MetaInfoInterface | |
OpenMS::DocumentIdentifier::swap(DocumentIdentifier &from) | DocumentIdentifier | |
OpenMS::UniqueIdInterface::swap(UniqueIdInterface &from) | UniqueIdInterface | inline |
UniqueIdIndexer< FeatureMap >::swap(UniqueIdIndexer &rhs) | UniqueIdIndexer< FeatureMap > | inline |
swapFeaturesOnly(FeatureMap &from) | FeatureMap | |
unassigned_peptide_identifications_ | FeatureMap | protected |
unique_id_ | UniqueIdInterface | protected |
uniqueid_to_index_ | UniqueIdIndexer< FeatureMap > | mutableprotected |
UniqueIdInterface() | UniqueIdInterface | inline |
UniqueIdInterface(const UniqueIdInterface &rhs)=default | UniqueIdInterface | |
UniqueIdInterface(UniqueIdInterface &&rhs)=default | UniqueIdInterface | |
UniqueIdMap typedef | UniqueIdIndexer< FeatureMap > | |
uniqueIdToIndex(UInt64 unique_id) const | UniqueIdIndexer< FeatureMap > | inline |
updateRanges() override | FeatureMap | virtual |
updateUniqueIdToIndex() const | UniqueIdIndexer< FeatureMap > | inline |
~DocumentIdentifier() | DocumentIdentifier | virtual |
~FeatureMap() override | FeatureMap | |
~MetaInfoInterface() | MetaInfoInterface | |
~UniqueIdInterface()=default | UniqueIdInterface | virtual |