ICPLLabeler Member List

This is the complete list of members for ICPLLabeler, including all inherited members.

addLabelToProteinHits_(SimTypes::FeatureMapSim &features, const String &label) const	ICPLLabeler	protected
addModificationToPeptideHit_(Feature &feature, const String &modification) const	ICPLLabeler	protected
BaseLabeler()	BaseLabeler
channel_description_	BaseLabeler	protected
check_defaults_	DefaultParamHandler	protected
consensus_	BaseLabeler	protected
create()	ICPLLabeler	inlinestatic
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
getChannelIntensityName(const Size channel_index) const	BaseLabeler
getConsensus()	BaseLabeler
getDefaultParameters() const	BaseLabeler	virtual
getDefaults() const	DefaultParamHandler
getDescription() const	BaseLabeler
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getProductName()	ICPLLabeler	inlinestatic
getSubsections() const	DefaultParamHandler
getUnmodifiedAASequence_(const Feature &feature, const String &label) const	ICPLLabeler	protected
heavy_channel_label_	ICPLLabeler	protected
HEAVY_FEATURE_MAPID_	ICPLLabeler	privatestatic
ICPLLabeler()	ICPLLabeler
light_channel_label_	ICPLLabeler	protected
LIGHT_FEATURE_MAPID_	ICPLLabeler	privatestatic
medium_channel_label_	ICPLLabeler	protected
MEDIUM_FEATURE_MAPID_	ICPLLabeler	privatestatic
mergeFeatures_(Feature &labeled_channel_feature, const AASequence &unmodified_sequence, Map< String, Feature > &unlabeled_features_index) const	ICPLLabeler	protected
mergeProteinAccessions_(Feature &target, const Feature &source) const	BaseLabeler	protected
mergeProteinIdentificationsMaps_(const SimTypes::FeatureMapSimVector &maps)	BaseLabeler	protected
operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
postDetectabilityHook(SimTypes::FeatureMapSimVector &) override	ICPLLabeler	virtual
postDigestHook(SimTypes::FeatureMapSimVector &) override	ICPLLabeler	virtual
postIonizationHook(SimTypes::FeatureMapSimVector &) override	ICPLLabeler	virtual
postRawMSHook(SimTypes::FeatureMapSimVector &) override	ICPLLabeler	virtual
postRawTandemMSHook(SimTypes::FeatureMapSimVector &, SimTypes::MSSimExperiment &) override	ICPLLabeler	virtual
postRTHook(SimTypes::FeatureMapSimVector &) override	ICPLLabeler	virtual
preCheck(Param &param) const override	ICPLLabeler	virtual
recomputeConsensus_(const SimTypes::FeatureMapSim &simulated_features)	BaseLabeler	protected
registerChildren()	BaseLabeler	static
rng_	BaseLabeler	protected
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setRnd(SimTypes::MutableSimRandomNumberGeneratorPtr rng)	BaseLabeler	virtual
setUpHook(SimTypes::FeatureMapSimVector &) override	ICPLLabeler	virtual
subsections_	DefaultParamHandler	protected
updateMembers_() override	ICPLLabeler	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~BaseLabeler() override	BaseLabeler
~DefaultParamHandler()	DefaultParamHandler	virtual
~ICPLLabeler() override	ICPLLabeler