OpenMS  2.8.0
IDMapper Member List

This is the complete list of members for IDMapper, including all inherited members.

annotate(PeakMap &map, const std::vector< PeptideIdentification > &peptide_ids, const std::vector< ProteinIdentification > &protein_ids, const bool clear_ids=false, const bool map_ms1=false)IDMapper
annotate(PeakMap &map, FeatureMap fmap, const bool clear_ids=false, const bool map_ms1=false)IDMapper
annotate(FeatureMap &map, const std::vector< PeptideIdentification > &ids, const std::vector< ProteinIdentification > &protein_ids, bool use_centroid_rt=false, bool use_centroid_mz=false, const PeakMap &spectra=PeakMap())IDMapper
annotate(ConsensusMap &map, const std::vector< PeptideIdentification > &ids, const std::vector< ProteinIdentification > &protein_ids, bool measure_from_subelements=false, bool annotate_ids_with_subelements=false, const PeakMap &spectra=PeakMap())IDMapper
check_defaults_DefaultParamHandlerprotected
checkHits_(const std::vector< PeptideIdentification > &ids) constIDMapperprotected
checkMassType_(const std::vector< DataProcessing > &processing) constIDMapperprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
getAbsoluteMZTolerance_(const double mz) constIDMapperprotected
getDefaults() constDefaultParamHandler
getIDDetails_(const PeptideIdentification &id, double &rt_pep, DoubleList &mz_values, IntList &charges, bool use_avg_mass=false) constIDMapperprotected
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
IDMapper()IDMapper
IDMapper(const IDMapper &cp)IDMapper
ignore_charge_IDMapperprotected
increaseBoundingBox_(DBoundingBox< 2 > &box)IDMapperprotected
isMatch_(const double rt_distance, const double mz_theoretical, const double mz_observed) constIDMapperprotected
mapPrecursorsToIdentifications(const PeakMap &spectra, const std::vector< PeptideIdentification > &ids, double mz_tol=0.001, double rt_tol=0.001)IDMapperinlinestatic
Measure enum nameIDMapper
measure_IDMapperprotected
MEASURE_DA enum valueIDMapper
MEASURE_PPM enum valueIDMapper
mz_tolerance_IDMapperprotected
operator=(const IDMapper &rhs)IDMapper
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
rt_tolerance_IDMapperprotected
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
subsections_DefaultParamHandlerprotected
updateMembers_() overrideIDMapperprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual