OpenMS  2.8.0
ITRAQLabeler Member List

This is the complete list of members for ITRAQLabeler, including all inherited members.

addModificationToPeptideHit_(Feature &feature, const String &modification, const Size &pos) constITRAQLabelerprotected
BaseLabeler()BaseLabeler
channel_description_BaseLabelerprotected
channel_map_ITRAQLabelerprotected
ChannelInfo typedefITRAQLabeler
ChannelMapType typedefITRAQLabeler
check_defaults_DefaultParamHandlerprotected
consensus_BaseLabelerprotected
create()ITRAQLabelerinlinestatic
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
getChannelIntensityName(const Size channel_index) constBaseLabeler
getConsensus()BaseLabeler
getDefaultParameters() constBaseLabelervirtual
getDefaults() constDefaultParamHandler
getDescription() constBaseLabeler
getItraqIntensity_(const Feature &f, const double MS2_RT_time) constITRAQLabelerprotected
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getProductName()ITRAQLabelerinlinestatic
getRTProfileIntensity_(const Feature &f, const double MS2_RT_time) constITRAQLabelerprotected
getSubsections() constDefaultParamHandler
isotope_corrections_ITRAQLabelerprotected
IsotopeMatrices typedefITRAQLabeler
itraq_type_ITRAQLabelerprotected
ITRAQLabeler()ITRAQLabeler
labelPeptide_(const Feature &feature, SimTypes::FeatureMapSim &result) constITRAQLabelerprotected
mergeFeatures_(Feature &labeled_channel_feature, const AASequence &unmodified_sequence, std::map< AASequence, Feature > &unlabeled_features_index) constITRAQLabelerprotected
mergeProteinAccessions_(Feature &target, const Feature &source) constBaseLabelerprotected
mergeProteinIdentificationsMaps_(const SimTypes::FeatureMapSimVector &maps)BaseLabelerprotected
operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
postDetectabilityHook(SimTypes::FeatureMapSimVector &) overrideITRAQLabelervirtual
postDigestHook(SimTypes::FeatureMapSimVector &) overrideITRAQLabelervirtual
postIonizationHook(SimTypes::FeatureMapSimVector &) overrideITRAQLabelervirtual
postRawMSHook(SimTypes::FeatureMapSimVector &) overrideITRAQLabelervirtual
postRawTandemMSHook(SimTypes::FeatureMapSimVector &, SimTypes::MSSimExperiment &) overrideITRAQLabelervirtual
postRTHook(SimTypes::FeatureMapSimVector &) overrideITRAQLabelervirtual
preCheck(Param &param) const overrideITRAQLabelervirtual
recomputeConsensus_(const SimTypes::FeatureMapSim &simulated_features)BaseLabelerprotected
registerChildren()BaseLabelerstatic
rng_BaseLabelerprotected
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setRnd(SimTypes::MutableSimRandomNumberGeneratorPtr rng)BaseLabelervirtual
setUpHook(SimTypes::FeatureMapSimVector &) overrideITRAQLabelervirtual
subsections_DefaultParamHandlerprotected
updateMembers_() overrideITRAQLabelerprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
y_labeling_efficiency_ITRAQLabelerprotected
~BaseLabeler() overrideBaseLabeler
~DefaultParamHandler()DefaultParamHandlervirtual
~ITRAQLabeler() overrideITRAQLabeler