ITRAQLabeler Member List

This is the complete list of members for ITRAQLabeler, including all inherited members.

addModificationToPeptideHit_(Feature &feature, const String &modification, const Size &pos) const	ITRAQLabeler	protected
BaseLabeler()	BaseLabeler
channel_description_	BaseLabeler	protected
channel_map_	ITRAQLabeler	protected
ChannelInfo typedef	ITRAQLabeler
ChannelMapType typedef	ITRAQLabeler
check_defaults_	DefaultParamHandler	protected
consensus_	BaseLabeler	protected
create()	ITRAQLabeler	inlinestatic
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
getChannelIntensityName(const Size channel_index) const	BaseLabeler
getConsensus()	BaseLabeler
getDefaultParameters() const	BaseLabeler	virtual
getDefaults() const	DefaultParamHandler
getDescription() const	BaseLabeler
getItraqIntensity_(const Feature &f, const double MS2_RT_time) const	ITRAQLabeler	protected
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getProductName()	ITRAQLabeler	inlinestatic
getRTProfileIntensity_(const Feature &f, const double MS2_RT_time) const	ITRAQLabeler	protected
getSubsections() const	DefaultParamHandler
isotope_corrections_	ITRAQLabeler	protected
IsotopeMatrices typedef	ITRAQLabeler
itraq_type_	ITRAQLabeler	protected
ITRAQLabeler()	ITRAQLabeler
labelPeptide_(const Feature &feature, SimTypes::FeatureMapSim &result) const	ITRAQLabeler	protected
mergeFeatures_(Feature &labeled_channel_feature, const AASequence &unmodified_sequence, std::map< AASequence, Feature > &unlabeled_features_index) const	ITRAQLabeler	protected
mergeProteinAccessions_(Feature &target, const Feature &source) const	BaseLabeler	protected
mergeProteinIdentificationsMaps_(const SimTypes::FeatureMapSimVector &maps)	BaseLabeler	protected
operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
postDetectabilityHook(SimTypes::FeatureMapSimVector &) override	ITRAQLabeler	virtual
postDigestHook(SimTypes::FeatureMapSimVector &) override	ITRAQLabeler	virtual
postIonizationHook(SimTypes::FeatureMapSimVector &) override	ITRAQLabeler	virtual
postRawMSHook(SimTypes::FeatureMapSimVector &) override	ITRAQLabeler	virtual
postRawTandemMSHook(SimTypes::FeatureMapSimVector &, SimTypes::MSSimExperiment &) override	ITRAQLabeler	virtual
postRTHook(SimTypes::FeatureMapSimVector &) override	ITRAQLabeler	virtual
preCheck(Param &param) const override	ITRAQLabeler	virtual
recomputeConsensus_(const SimTypes::FeatureMapSim &simulated_features)	BaseLabeler	protected
registerChildren()	BaseLabeler	static
rng_	BaseLabeler	protected
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setRnd(SimTypes::MutableSimRandomNumberGeneratorPtr rng)	BaseLabeler	virtual
setUpHook(SimTypes::FeatureMapSimVector &) override	ITRAQLabeler	virtual
subsections_	DefaultParamHandler	protected
updateMembers_() override	ITRAQLabeler	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
y_labeling_efficiency_	ITRAQLabeler	protected
~BaseLabeler() override	BaseLabeler
~DefaultParamHandler()	DefaultParamHandler	virtual
~ITRAQLabeler() override	ITRAQLabeler