OpenMS  2.8.0
IdentificationData Member List

This is the complete list of members for IdentificationData, including all inherited members.

addMetaValues(const MetaInfoInterface &from)MetaInfoInterface
AddressLookup typedefIdentificationData
addScore(ObservationMatchRef match_ref, ScoreTypeRef score_ref, double value)IdentificationData
AdductOpt typedefIdentificationData
AdductRef typedefIdentificationData
Adducts typedefIdentificationData
adducts_IdentificationDataprotected
AppliedProcessingStep typedefIdentificationData
AppliedProcessingSteps typedefIdentificationData
calculateCoverages(bool check_molecule_length=false)IdentificationData
checkAppliedProcessingSteps_(const AppliedProcessingSteps &steps_and_scores) constIdentificationDataprotected
checkParentMatches_(const ParentMatches &matches, MoleculeType expected_type) constIdentificationDataprotected
checkScoreTypes_(const std::map< ScoreTypeRef, double > &scores) constIdentificationDataprotected
cleanup(bool require_observation_match=true, bool require_identified_sequence=true, bool require_parent_match=true, bool require_parent_group=false, bool require_match_group=false)IdentificationData
clear()IdentificationData
clearCurrentProcessingStep()IdentificationData
clearMetaInfo()MetaInfoInterface
createIfNotExists_()MetaInfoInterfaceinlineprotected
current_step_ref_IdentificationDataprotected
db_search_params_IdentificationDataprotected
db_search_steps_IdentificationDataprotected
DBSearchParam typedefIdentificationData
DBSearchParams typedefIdentificationData
DBSearchSteps typedefIdentificationData
empty() constIdentificationData
findScoreType(const String &score_name) constIdentificationData
getAdducts() constIdentificationDatainline
getBestMatchPerObservation(ScoreTypeRef score_ref, bool require_score=false) constIdentificationData
getCurrentProcessingStep()IdentificationData
getDBSearchParams() constIdentificationDatainline
getDBSearchSteps() constIdentificationDatainline
getIdentifiedCompounds() constIdentificationDatainline
getIdentifiedOligos() constIdentificationDatainline
getIdentifiedPeptides() constIdentificationDatainline
getInputFiles() constIdentificationDatainline
getKeys(std::vector< String > &keys) constMetaInfoInterface
getKeys(std::vector< UInt > &keys) constMetaInfoInterface
getMatchesForObservation(ObservationRef obs_ref) constIdentificationData
getMetaValue(const String &name, const DataValue &default_value=DataValue::EMPTY) constMetaInfoInterface
getMetaValue(UInt index, const DataValue &default_value=DataValue::EMPTY) constMetaInfoInterface
getObservationMatches() constIdentificationDatainline
getObservationMatchGroups() constIdentificationDatainline
getObservations() constIdentificationDatainline
getParentGroupSets() constIdentificationDatainline
getParentSequences() constIdentificationDatainline
getProcessingSoftwares() constIdentificationDatainline
getProcessingSteps() constIdentificationDatainline
getScoreTypes() constIdentificationDatainline
IdentificationData()IdentificationDatainline
IdentificationData(const IdentificationData &other)IdentificationData
IdentificationData(IdentificationData &&other) noexceptIdentificationDatainline
identified_compound_lookup_IdentificationDataprotected
identified_compounds_IdentificationDataprotected
identified_oligo_lookup_IdentificationDataprotected
identified_oligos_IdentificationDataprotected
identified_peptide_lookup_IdentificationDataprotected
identified_peptides_IdentificationDataprotected
IdentifiedCompound typedefIdentificationData
IdentifiedCompoundRef typedefIdentificationData
IdentifiedCompounds typedefIdentificationData
IdentifiedMolecule typedefIdentificationData
IdentifiedOligo typedefIdentificationData
IdentifiedOligoRef typedefIdentificationData
IdentifiedOligos typedefIdentificationData
IdentifiedPeptide typedefIdentificationData
IdentifiedPeptideRef typedefIdentificationData
IdentifiedPeptides typedefIdentificationData
IDFilter classIdentificationDatafriend
input_files_IdentificationDataprotected
InputFile typedefIdentificationData
InputFileRef typedefIdentificationData
InputFiles typedefIdentificationData
insertIntoMultiIndex_(ContainerType &container, const ElementType &element)IdentificationDatainlineprotected
insertIntoMultiIndex_(ContainerType &container, const ElementType &element, AddressLookup &lookup)IdentificationDatainlineprotected
isMetaEmpty() constMetaInfoInterface
isValidHashedReference_(RefType ref, const AddressLookup &lookup)IdentificationDatainlineprotectedstatic
isValidReference_(RefType ref, ContainerType &container)IdentificationDatainlineprotectedstatic
MapAlignmentTransformer classIdentificationDatafriend
MassType typedefIdentificationData
MatchGroupRef typedefIdentificationData
merge(const IdentificationData &other)IdentificationData
mergeScoredProcessingResults_(ScoredProcessingResult &result, const ScoredProcessingResult &other, const RefTranslator &trans)IdentificationDataprotected
meta_MetaInfoInterfaceprotected
MetaInfoInterface()MetaInfoInterface
MetaInfoInterface(const MetaInfoInterface &rhs)MetaInfoInterface
MetaInfoInterface(MetaInfoInterface &&) noexceptMetaInfoInterface
metaRegistry()MetaInfoInterfacestatic
metaValueExists(const String &name) constMetaInfoInterface
metaValueExists(UInt index) constMetaInfoInterface
MoleculeType typedefIdentificationData
no_checks_IdentificationDataprotected
Observation typedefIdentificationData
observation_lookup_IdentificationDataprotected
observation_match_groups_IdentificationDataprotected
observation_match_lookup_IdentificationDataprotected
observation_matches_IdentificationDataprotected
ObservationMatch typedefIdentificationData
ObservationMatches typedefIdentificationData
ObservationMatchGroup typedefIdentificationData
ObservationMatchGroups typedefIdentificationData
ObservationMatchRef typedefIdentificationData
ObservationRef typedefIdentificationData
Observations typedefIdentificationData
observations_IdentificationDataprotected
operator!=(const MetaInfoInterface &rhs) constMetaInfoInterface
operator=(const MetaInfoInterface &rhs)MetaInfoInterface
operator=(MetaInfoInterface &&) noexceptMetaInfoInterface
operator==(const MetaInfoInterface &rhs) constMetaInfoInterface
parent_groups_IdentificationDataprotected
parent_lookup_IdentificationDataprotected
ParentGroup typedefIdentificationData
ParentGroupRef typedefIdentificationData
ParentGroups typedefIdentificationData
ParentGroupSet typedefIdentificationData
ParentGroupSets typedefIdentificationData
ParentMatch typedefIdentificationData
ParentMatches typedefIdentificationData
parents_IdentificationDataprotected
ParentSequence typedefIdentificationData
ParentSequenceRef typedefIdentificationData
ParentSequences typedefIdentificationData
PeakAnnotations typedefIdentificationData
pickScoreType(const ScoredProcessingResults &container, bool all_elements=false, bool any_score=false) constIdentificationDatainline
processing_softwares_IdentificationDataprotected
processing_steps_IdentificationDataprotected
ProcessingSoftware typedefIdentificationData
ProcessingSoftwareRef typedefIdentificationData
ProcessingSoftwares typedefIdentificationData
ProcessingStep typedefIdentificationData
ProcessingStepRef typedefIdentificationData
ProcessingSteps typedefIdentificationData
registerAdduct(const AdductInfo &adduct)IdentificationData
registerDBSearchParam(const DBSearchParam &param)IdentificationData
registerIdentifiedCompound(const IdentifiedCompound &compound)IdentificationData
registerIdentifiedOligo(const IdentifiedOligo &oligo)IdentificationData
registerIdentifiedPeptide(const IdentifiedPeptide &peptide)IdentificationData
registerInputFile(const InputFile &file)IdentificationData
registerObservation(const Observation &obs)IdentificationData
registerObservationMatch(const ObservationMatch &match)IdentificationData
registerObservationMatchGroup(const ObservationMatchGroup &group)IdentificationData
registerParentGroupSet(const ParentGroupSet &groups)IdentificationData
registerParentSequence(const ParentSequence &parent)IdentificationData
registerProcessingSoftware(const ProcessingSoftware &software)IdentificationData
registerProcessingStep(const ProcessingStep &step)IdentificationData
registerProcessingStep(const ProcessingStep &step, SearchParamRef search_ref)IdentificationData
registerScoreType(const ScoreType &score)IdentificationData
removeFromSetIf_(ContainerType &container, PredicateType predicate)IdentificationDatainlineprotectedstatic
removeFromSetIfNotHashed_(ContainerType &container, const AddressLookup &lookup)IdentificationDatainlineprotectedstatic
removeMetaValue(const String &name)MetaInfoInterface
removeMetaValue(UInt index)MetaInfoInterface
score_types_IdentificationDataprotected
ScoredProcessingResult typedefIdentificationData
ScoreType typedefIdentificationData
ScoreTypeRef typedefIdentificationData
ScoreTypes typedefIdentificationData
SearchParamRef typedefIdentificationData
setCurrentProcessingStep(ProcessingStepRef step_ref)IdentificationData
setMetaValue(const ObservationMatchRef ref, const String &key, const DataValue &value)IdentificationData
setMetaValue(const ObservationRef ref, const String &key, const DataValue &value)IdentificationData
setMetaValue(const IdentifiedMolecule &var, const String &key, const DataValue &value)IdentificationData
setMetaValue(const String &name, const DataValue &value)IdentificationData
setMetaValue(UInt index, const DataValue &value)IdentificationData
OpenMS::MetaInfoInterface::setMetaValue(const String &name, const DataValue &value)MetaInfoInterface
OpenMS::MetaInfoInterface::setMetaValue(UInt index, const DataValue &value)MetaInfoInterface
setMetaValue_(const RefType ref, const String &key, const DataValue &value, ContainerType &container, const AddressLookup &lookup=AddressLookup())IdentificationDatainlineprotected
swap(IdentificationData &other)IdentificationData
OpenMS::MetaInfoInterface::swap(MetaInfoInterface &rhs)MetaInfoInterface
updateAddressLookup_(const ContainerType &container, AddressLookup &lookup)IdentificationDatainlineprotectedstatic
~MetaInfoInterface()MetaInfoInterface