IdentificationData Member List

This is the complete list of members for IdentificationData, including all inherited members.

addMetaValues(const MetaInfoInterface &from)	MetaInfoInterface
AddressLookup typedef	IdentificationData
addScore(ObservationMatchRef match_ref, ScoreTypeRef score_ref, double value)	IdentificationData
AdductOpt typedef	IdentificationData
AdductRef typedef	IdentificationData
Adducts typedef	IdentificationData
adducts_	IdentificationData	protected
AppliedProcessingStep typedef	IdentificationData
AppliedProcessingSteps typedef	IdentificationData
calculateCoverages(bool check_molecule_length=false)	IdentificationData
checkAppliedProcessingSteps_(const AppliedProcessingSteps &steps_and_scores) const	IdentificationData	protected
checkParentMatches_(const ParentMatches &matches, MoleculeType expected_type) const	IdentificationData	protected
checkScoreTypes_(const std::map< ScoreTypeRef, double > &scores) const	IdentificationData	protected
cleanup(bool require_observation_match=true, bool require_identified_sequence=true, bool require_parent_match=true, bool require_parent_group=false, bool require_match_group=false)	IdentificationData
clear()	IdentificationData
clearCurrentProcessingStep()	IdentificationData
clearMetaInfo()	MetaInfoInterface
createIfNotExists_()	MetaInfoInterface	inlineprotected
current_step_ref_	IdentificationData	protected
db_search_params_	IdentificationData	protected
db_search_steps_	IdentificationData	protected
DBSearchParam typedef	IdentificationData
DBSearchParams typedef	IdentificationData
DBSearchSteps typedef	IdentificationData
empty() const	IdentificationData
findScoreType(const String &score_name) const	IdentificationData
getAdducts() const	IdentificationData	inline
getBestMatchPerObservation(ScoreTypeRef score_ref, bool require_score=false) const	IdentificationData
getCurrentProcessingStep()	IdentificationData
getDBSearchParams() const	IdentificationData	inline
getDBSearchSteps() const	IdentificationData	inline
getIdentifiedCompounds() const	IdentificationData	inline
getIdentifiedOligos() const	IdentificationData	inline
getIdentifiedPeptides() const	IdentificationData	inline
getInputFiles() const	IdentificationData	inline
getKeys(std::vector< String > &keys) const	MetaInfoInterface
getKeys(std::vector< UInt > &keys) const	MetaInfoInterface
getMatchesForObservation(ObservationRef obs_ref) const	IdentificationData
getMetaValue(const String &name, const DataValue &default_value=DataValue::EMPTY) const	MetaInfoInterface
getMetaValue(UInt index, const DataValue &default_value=DataValue::EMPTY) const	MetaInfoInterface
getObservationMatches() const	IdentificationData	inline
getObservationMatchGroups() const	IdentificationData	inline
getObservations() const	IdentificationData	inline
getParentGroupSets() const	IdentificationData	inline
getParentSequences() const	IdentificationData	inline
getProcessingSoftwares() const	IdentificationData	inline
getProcessingSteps() const	IdentificationData	inline
getScoreTypes() const	IdentificationData	inline
IdentificationData()	IdentificationData	inline
IdentificationData(const IdentificationData &other)	IdentificationData
IdentificationData(IdentificationData &&other) noexcept	IdentificationData	inline
identified_compound_lookup_	IdentificationData	protected
identified_compounds_	IdentificationData	protected
identified_oligo_lookup_	IdentificationData	protected
identified_oligos_	IdentificationData	protected
identified_peptide_lookup_	IdentificationData	protected
identified_peptides_	IdentificationData	protected
IdentifiedCompound typedef	IdentificationData
IdentifiedCompoundRef typedef	IdentificationData
IdentifiedCompounds typedef	IdentificationData
IdentifiedMolecule typedef	IdentificationData
IdentifiedOligo typedef	IdentificationData
IdentifiedOligoRef typedef	IdentificationData
IdentifiedOligos typedef	IdentificationData
IdentifiedPeptide typedef	IdentificationData
IdentifiedPeptideRef typedef	IdentificationData
IdentifiedPeptides typedef	IdentificationData
IDFilter class	IdentificationData	friend
input_files_	IdentificationData	protected
InputFile typedef	IdentificationData
InputFileRef typedef	IdentificationData
InputFiles typedef	IdentificationData
insertIntoMultiIndex_(ContainerType &container, const ElementType &element)	IdentificationData	inlineprotected
insertIntoMultiIndex_(ContainerType &container, const ElementType &element, AddressLookup &lookup)	IdentificationData	inlineprotected
isMetaEmpty() const	MetaInfoInterface
isValidHashedReference_(RefType ref, const AddressLookup &lookup)	IdentificationData	inlineprotectedstatic
isValidReference_(RefType ref, ContainerType &container)	IdentificationData	inlineprotectedstatic
MapAlignmentTransformer class	IdentificationData	friend
MassType typedef	IdentificationData
MatchGroupRef typedef	IdentificationData
merge(const IdentificationData &other)	IdentificationData
mergeScoredProcessingResults_(ScoredProcessingResult &result, const ScoredProcessingResult &other, const RefTranslator &trans)	IdentificationData	protected
meta_	MetaInfoInterface	protected
MetaInfoInterface()	MetaInfoInterface
MetaInfoInterface(const MetaInfoInterface &rhs)	MetaInfoInterface
MetaInfoInterface(MetaInfoInterface &&) noexcept	MetaInfoInterface
metaRegistry()	MetaInfoInterface	static
metaValueExists(const String &name) const	MetaInfoInterface
metaValueExists(UInt index) const	MetaInfoInterface
MoleculeType typedef	IdentificationData
no_checks_	IdentificationData	protected
Observation typedef	IdentificationData
observation_lookup_	IdentificationData	protected
observation_match_groups_	IdentificationData	protected
observation_match_lookup_	IdentificationData	protected
observation_matches_	IdentificationData	protected
ObservationMatch typedef	IdentificationData
ObservationMatches typedef	IdentificationData
ObservationMatchGroup typedef	IdentificationData
ObservationMatchGroups typedef	IdentificationData
ObservationMatchRef typedef	IdentificationData
ObservationRef typedef	IdentificationData
Observations typedef	IdentificationData
observations_	IdentificationData	protected
operator!=(const MetaInfoInterface &rhs) const	MetaInfoInterface
operator=(const MetaInfoInterface &rhs)	MetaInfoInterface
operator=(MetaInfoInterface &&) noexcept	MetaInfoInterface
operator==(const MetaInfoInterface &rhs) const	MetaInfoInterface
parent_groups_	IdentificationData	protected
parent_lookup_	IdentificationData	protected
ParentGroup typedef	IdentificationData
ParentGroupRef typedef	IdentificationData
ParentGroups typedef	IdentificationData
ParentGroupSet typedef	IdentificationData
ParentGroupSets typedef	IdentificationData
ParentMatch typedef	IdentificationData
ParentMatches typedef	IdentificationData
parents_	IdentificationData	protected
ParentSequence typedef	IdentificationData
ParentSequenceRef typedef	IdentificationData
ParentSequences typedef	IdentificationData
PeakAnnotations typedef	IdentificationData
pickScoreType(const ScoredProcessingResults &container, bool all_elements=false, bool any_score=false) const	IdentificationData	inline
processing_softwares_	IdentificationData	protected
processing_steps_	IdentificationData	protected
ProcessingSoftware typedef	IdentificationData
ProcessingSoftwareRef typedef	IdentificationData
ProcessingSoftwares typedef	IdentificationData
ProcessingStep typedef	IdentificationData
ProcessingStepRef typedef	IdentificationData
ProcessingSteps typedef	IdentificationData
registerAdduct(const AdductInfo &adduct)	IdentificationData
registerDBSearchParam(const DBSearchParam &param)	IdentificationData
registerIdentifiedCompound(const IdentifiedCompound &compound)	IdentificationData
registerIdentifiedOligo(const IdentifiedOligo &oligo)	IdentificationData
registerIdentifiedPeptide(const IdentifiedPeptide &peptide)	IdentificationData
registerInputFile(const InputFile &file)	IdentificationData
registerObservation(const Observation &obs)	IdentificationData
registerObservationMatch(const ObservationMatch &match)	IdentificationData
registerObservationMatchGroup(const ObservationMatchGroup &group)	IdentificationData
registerParentGroupSet(const ParentGroupSet &groups)	IdentificationData
registerParentSequence(const ParentSequence &parent)	IdentificationData
registerProcessingSoftware(const ProcessingSoftware &software)	IdentificationData
registerProcessingStep(const ProcessingStep &step)	IdentificationData
registerProcessingStep(const ProcessingStep &step, SearchParamRef search_ref)	IdentificationData
registerScoreType(const ScoreType &score)	IdentificationData
removeFromSetIf_(ContainerType &container, PredicateType predicate)	IdentificationData	inlineprotectedstatic
removeFromSetIfNotHashed_(ContainerType &container, const AddressLookup &lookup)	IdentificationData	inlineprotectedstatic
removeMetaValue(const String &name)	MetaInfoInterface
removeMetaValue(UInt index)	MetaInfoInterface
score_types_	IdentificationData	protected
ScoredProcessingResult typedef	IdentificationData
ScoreType typedef	IdentificationData
ScoreTypeRef typedef	IdentificationData
ScoreTypes typedef	IdentificationData
SearchParamRef typedef	IdentificationData
setCurrentProcessingStep(ProcessingStepRef step_ref)	IdentificationData
setMetaValue(const ObservationMatchRef ref, const String &key, const DataValue &value)	IdentificationData
setMetaValue(const ObservationRef ref, const String &key, const DataValue &value)	IdentificationData
setMetaValue(const IdentifiedMolecule &var, const String &key, const DataValue &value)	IdentificationData
setMetaValue(const String &name, const DataValue &value)	IdentificationData
setMetaValue(UInt index, const DataValue &value)	IdentificationData
OpenMS::MetaInfoInterface::setMetaValue(const String &name, const DataValue &value)	MetaInfoInterface
OpenMS::MetaInfoInterface::setMetaValue(UInt index, const DataValue &value)	MetaInfoInterface
setMetaValue_(const RefType ref, const String &key, const DataValue &value, ContainerType &container, const AddressLookup &lookup=AddressLookup())	IdentificationData	inlineprotected
swap(IdentificationData &other)	IdentificationData
OpenMS::MetaInfoInterface::swap(MetaInfoInterface &rhs)	MetaInfoInterface
updateAddressLookup_(const ContainerType &container, AddressLookup &lookup)	IdentificationData	inlineprotectedstatic
~MetaInfoInterface()	MetaInfoInterface