OpenMS  2.8.0
ConsensusXMLHandler Member List

This is the complete list of members for ConsensusXMLHandler, including all inherited members.

accession_to_id_ConsensusXMLHandlerprotected
act_cons_element_ConsensusXMLHandlerprotected
ActionMode enum nameXMLHandler
addProteinGroups_(MetaInfoInterface &meta, const std::vector< ProteinIdentification::ProteinGroup > &groups, const String &group_name, const std::unordered_map< std::string, UInt > &accession_to_id, const String &runid, XMLHandler::ActionMode mode)ConsensusXMLHandlerprotected
asBool_(const String &in) constXMLHandlerinlineprotected
asDateTime_(String date_string) constXMLHandlerinlineprotected
asDouble_(const String &in) constXMLHandlerinlineprotected
asFloat_(const String &in) constXMLHandlerinlineprotected
asInt_(const String &in) constXMLHandlerinlineprotected
asInt_(const XMLCh *in) constXMLHandlerinlineprotected
asUInt_(const String &in) constXMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
cconsensus_map_ConsensusXMLHandlerprotected
characters(const XMLCh *const chars, const XMLSize_t length) overrideConsensusXMLHandlerprotected
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) constXMLHandler
CMD enum valueProgressLogger
consensus_map_ConsensusXMLHandlerprotected
ConsensusXMLHandler(ConsensusMap &map, const String &filename)ConsensusXMLHandler
ConsensusXMLHandler(const ConsensusMap &map, const String &filename)ConsensusXMLHandler
current_logger_ProgressLoggermutableprotected
cv_terms_XMLHandlerprotected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)XMLHandlerprotected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) overrideConsensusXMLHandlerprotected
endProgress() constProgressLogger
equal_(const XMLCh *a, const XMLCh *b) constXMLHandlerinlineprotected
error(const xercesc::SAXParseException &exception) overrideXMLHandler
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
error_message_XMLHandlermutableprotected
errorString()XMLHandler
expectList_(const String &str) constXMLHandlerinlineprivate
fatalError(const xercesc::SAXParseException &exception) overrideXMLHandler
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
file_XMLHandlerprotected
getLoadDetail() constXMLHandlervirtual
getLogType() constProgressLogger
getOptions()ConsensusXMLHandler
getOptions() constConsensusXMLHandler
getProteinGroups_(std::vector< ProteinIdentification::ProteinGroup > &groups, const String &group_name)ConsensusXMLHandlerprotected
GUI enum valueProgressLogger
id_identifier_ConsensusXMLHandlerprotected
identifier_id_ConsensusXMLHandlerprotected
it_ConsensusXMLHandlerprotected
last_invoke_ProgressLoggermutableprotected
last_meta_ConsensusXMLHandlerprotected
LD_ALLDATA enum valueXMLHandler
LD_COUNTS_WITHOPTIONS enum valueXMLHandler
LD_RAWCOUNTS enum valueXMLHandler
LOAD enum valueXMLHandler
load_detail_XMLHandlerprotected
LOADDETAIL enum nameXMLHandler
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
nextProgress() constProgressLogger
NONE enum valueProgressLogger
open_tags_XMLHandlerprotected
operator=(const ProgressLogger &other)ProgressLogger
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
options_ConsensusXMLHandlerprotected
pep_hit_ConsensusXMLHandlerprotected
pep_id_ConsensusXMLHandlerprotected
peptide_evidences_ConsensusXMLHandlerprotected
pos_ConsensusXMLHandlerprotected
progress_ConsensusXMLHandlerprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
prot_hit_ConsensusXMLHandlerprotected
prot_id_ConsensusXMLHandlerprotected
proteinid_to_accession_ConsensusXMLHandlerprotected
recursion_depth_ProgressLoggerprotectedstatic
reset()XMLHandler
search_param_ConsensusXMLHandlerprotected
setLoadDetail(const LOADDETAIL d)XMLHandlervirtual
setLogType(LogType type) constProgressLogger
setOptions(const PeakFileOptions &)ConsensusXMLHandler
setProgress(SignedSize value) constProgressLogger
sm_XMLHandlerprotected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) overrideConsensusXMLHandlerprotected
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
STORE enum valueXMLHandler
type_ProgressLoggermutableprotected
version_XMLHandlerprotected
warning(const xercesc::SAXParseException &exception) overrideXMLHandler
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
writePeptideIdentification_(const String &filename, std::ostream &os, const PeptideIdentification &id, const String &tag_name, UInt indentation_level)ConsensusXMLHandlerprotected
writeTo(std::ostream &os) overrideConsensusXMLHandlervirtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) constXMLHandlerprotected
writeXMLEscape(const String &to_escape)XMLHandlerinlinestatic
XMLHandler(const String &filename, const String &version)XMLHandler
XMLHandler()XMLHandlerprivate
~ConsensusXMLHandler() overrideConsensusXMLHandler
~ProgressLogger()ProgressLoggervirtual
~XMLHandler() overrideXMLHandler
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