OpenMS  2.8.0
MzIdentMLDOMHandler Member List

This is the complete list of members for MzIdentMLDOMHandler, including all inherited members.

as_map_MzIdentMLDOMHandlerprivate
buildAnalysisCollection_(xercesc::DOMElement *analysisCollectionElements)MzIdentMLDOMHandlerprotected
buildAnalysisDataCollection_(xercesc::DOMElement *analysisElements)MzIdentMLDOMHandlerprotected
buildAnalysisProtocolCollection_(xercesc::DOMElement *protocolElements)MzIdentMLDOMHandlerprotected
buildAnalysisSoftwareList_(xercesc::DOMElement *analysisSoftwareElements)MzIdentMLDOMHandlerprotected
buildCvList_(xercesc::DOMElement *cvElements)MzIdentMLDOMHandlerprotected
buildEnclosedCV_(xercesc::DOMElement *parentElement, const String &encel, const String &acc, const String &name, const String &cvref)MzIdentMLDOMHandlerprotected
buildInputDataCollection_(xercesc::DOMElement *inputElements)MzIdentMLDOMHandlerprotected
buildSequenceCollection_(xercesc::DOMElement *sequenceCollectionElements)MzIdentMLDOMHandlerprotected
cpep_id_MzIdentMLDOMHandlerprotected
cpro_id_MzIdentMLDOMHandlerprotected
cv_MzIdentMLDOMHandlerprotected
db_map_MzIdentMLDOMHandlerprivate
db_sq_map_MzIdentMLDOMHandlerprivate
findSearchParameters_(std::pair< CVTermList, std::map< String, DataValue > > as_params)MzIdentMLDOMHandlerprotectedstatic
getChildWithName_(const String &parent_accession, const String &name) constMzIdentMLDOMHandlerprotected
hit_pev_MzIdentMLDOMHandlerprivate
logger_MzIdentMLDOMHandlerprotected
mzid_parser_MzIdentMLDOMHandlerprivate
MzIdentMLDOMHandler(const std::vector< ProteinIdentification > &pro_id, const std::vector< PeptideIdentification > &pep_id, const String &version, const ProgressLogger &logger)MzIdentMLDOMHandler
MzIdentMLDOMHandler(std::vector< ProteinIdentification > &pro_id, std::vector< PeptideIdentification > &pep_id, const String &version, const ProgressLogger &logger)MzIdentMLDOMHandler
MzIdentMLDOMHandler()MzIdentMLDOMHandlerprivate
MzIdentMLDOMHandler(const MzIdentMLDOMHandler &rhs)MzIdentMLDOMHandlerprivate
operator=(const MzIdentMLDOMHandler &rhs)MzIdentMLDOMHandlerprivate
p_pv_map_MzIdentMLDOMHandlerprivate
parseAnalysisSoftwareList_(xercesc::DOMNodeList *analysisSoftwareElements)MzIdentMLDOMHandlerprotected
parseCvParam_(xercesc::DOMElement *param)MzIdentMLDOMHandlerprotected
parseDBSequenceElements_(xercesc::DOMNodeList *dbSequenceElements)MzIdentMLDOMHandlerprotected
parseInputElements_(xercesc::DOMNodeList *inputElements)MzIdentMLDOMHandlerprotected
parseParamGroup_(xercesc::DOMNodeList *paramGroup)MzIdentMLDOMHandlerprotected
parsePeptideElements_(xercesc::DOMNodeList *peptideElements)MzIdentMLDOMHandlerprotected
parsePeptideEvidenceElements_(xercesc::DOMNodeList *peptideEvidenceElements)MzIdentMLDOMHandlerprotected
parsePeptideSiblings_(xercesc::DOMElement *peptide)MzIdentMLDOMHandlerprotected
parseProteinAmbiguityGroupElement_(xercesc::DOMElement *proteinAmbiguityGroupElement, ProteinIdentification &protein_identification)MzIdentMLDOMHandlerprotected
parseProteinDetectionHypothesisElement_(xercesc::DOMElement *proteinDetectionHypothesisElement, ProteinIdentification &protein_identification)MzIdentMLDOMHandlerprotected
parseProteinDetectionListElements_(xercesc::DOMNodeList *proteinDetectionListElements)MzIdentMLDOMHandlerprotected
parseSpectrumIdentificationElements_(xercesc::DOMNodeList *spectrumIdentificationElements)MzIdentMLDOMHandlerprotected
parseSpectrumIdentificationItemElement_(xercesc::DOMElement *spectrumIdentificationItemElement, PeptideIdentification &spectrum_identification, String &spectrumIdentificationList_ref)MzIdentMLDOMHandlerprotected
parseSpectrumIdentificationItemSetXLMS(std::set< String >::const_iterator set_it, std::multimap< String, int > xl_val_map, xercesc::DOMElement *element_res, String spectrumID)MzIdentMLDOMHandlerprotected
parseSpectrumIdentificationListElements_(xercesc::DOMNodeList *spectrumIdentificationListElements)MzIdentMLDOMHandlerprotected
parseSpectrumIdentificationProtocolElements_(xercesc::DOMNodeList *spectrumIdentificationProtocolElements)MzIdentMLDOMHandlerprotected
parseUserParam_(xercesc::DOMElement *param)MzIdentMLDOMHandlerprotected
pe_ev_map_MzIdentMLDOMHandlerprivate
pep_id_MzIdentMLDOMHandlerprotected
pep_map_MzIdentMLDOMHandlerprivate
pro_id_MzIdentMLDOMHandlerprotected
pv_db_map_MzIdentMLDOMHandlerprivate
readMzIdentMLFile(const std::string &mzid_file)MzIdentMLDOMHandler
schema_version_MzIdentMLDOMHandlerprotected
sd_map_MzIdentMLDOMHandlerprivate
search_engine_MzIdentMLDOMHandlerprivate
search_engine_version_MzIdentMLDOMHandlerprivate
si_map_MzIdentMLDOMHandlerprivate
si_pro_map_MzIdentMLDOMHandlerprivate
sp_map_MzIdentMLDOMHandlerprivate
sr_map_MzIdentMLDOMHandlerprivate
unimod_MzIdentMLDOMHandlerprotected
writeMzIdentMLFile(const std::string &mzid_file)MzIdentMLDOMHandler
xl_acceptor_pos_map_MzIdentMLDOMHandlerprivate
xl_donor_pos_map_MzIdentMLDOMHandlerprivate
xl_id_acceptor_map_MzIdentMLDOMHandlerprivate
xl_id_donor_map_MzIdentMLDOMHandlerprivate
xl_mass_map_MzIdentMLDOMHandlerprivate
xl_mod_map_MzIdentMLDOMHandlerprivate
xl_ms_search_MzIdentMLDOMHandlerprivate
xml_cvparam_tag_ptr_MzIdentMLDOMHandlerprivate
xml_name_attr_ptr_MzIdentMLDOMHandlerprivate
xml_root_tag_ptr_MzIdentMLDOMHandlerprivate
~MzIdentMLDOMHandler()MzIdentMLDOMHandlervirtual