 |
OpenMS
2.8.0
|
This is the complete list of members for MzQuantMLHandler, including all inherited members.
| ActionMode enum name | XMLHandler | |
| asBool_(const String &in) const | XMLHandler | inlineprotected |
| asDateTime_(String date_string) const | XMLHandler | inlineprotected |
| asDouble_(const String &in) const | XMLHandler | inlineprotected |
| asFloat_(const String &in) const | XMLHandler | inlineprotected |
| asInt_(const String &in) const | XMLHandler | inlineprotected |
| asInt_(const XMLCh *in) const | XMLHandler | inlineprotected |
| asUInt_(const String &in) const | XMLHandler | inlineprotected |
| attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| cf_cf_obj_ | MzQuantMLHandler | private |
| characters(const XMLCh *const chars, const XMLSize_t length) override | MzQuantMLHandler | |
| checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) const | XMLHandler | |
| cm_cf_ids_ | MzQuantMLHandler | private |
| cmsq_ | MzQuantMLHandler | protected |
| current_assay_ | MzQuantMLHandler | private |
| current_cf_id_ | MzQuantMLHandler | private |
| current_col_types_ | MzQuantMLHandler | private |
| current_count_ | MzQuantMLHandler | private |
| current_dm_values_ | MzQuantMLHandler | private |
| current_dp_ | MzQuantMLHandler | private |
| current_files_ | MzQuantMLHandler | private |
| current_id_ | MzQuantMLHandler | private |
| current_orderedps_ | MzQuantMLHandler | private |
| current_pas_ | MzQuantMLHandler | private |
| current_row_ | MzQuantMLHandler | private |
| current_sws_ | MzQuantMLHandler | private |
| cv_ | MzQuantMLHandler | protected |
| cv_terms_ | XMLHandler | protected |
| cvp_stack_ | MzQuantMLHandler | private |
| cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | protected |
| endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) override | MzQuantMLHandler | |
| equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inlineprotected |
| error(const xercesc::SAXParseException &exception) override | XMLHandler | |
| error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| error_message_ | XMLHandler | mutableprotected |
| errorString() | XMLHandler | |
| expectList_(const String &str) const | XMLHandler | inlineprivate |
| f_cf_ids_ | MzQuantMLHandler | private |
| f_f_obj_ | MzQuantMLHandler | private |
| fatalError(const xercesc::SAXParseException &exception) override | XMLHandler | |
| fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| file_ | XMLHandler | protected |
| getChildWithName_(const String &parent_accession, const String &name) const | MzQuantMLHandler | protected |
| getLoadDetail() const | XMLHandler | virtual |
| handleCVParam_(const String &parent_parent_tag, const String &parent_tag, const String &accession, const String &name, const String &value, const xercesc::Attributes &attributes, const String &cv_ref, const String &unit_accession="") | MzQuantMLHandler | protected |
| handleUserParam_(const String &parent_parent_tag, const String &parent_tag, const String &name, const String &type, const String &value) | MzQuantMLHandler | protected |
| LD_ALLDATA enum value | XMLHandler | |
| LD_COUNTS_WITHOPTIONS enum value | XMLHandler | |
| LD_RAWCOUNTS enum value | XMLHandler | |
| LOAD enum value | XMLHandler | |
| load_detail_ | XMLHandler | protected |
| LOADDETAIL enum name | XMLHandler | |
| logger_ | MzQuantMLHandler | protected |
| msq_ | MzQuantMLHandler | protected |
| MzQuantMLHandler(const MSQuantifications &msq, const String &filename, const String &version, const ProgressLogger &logger) | MzQuantMLHandler | |
| MzQuantMLHandler(MSQuantifications &msq, const String &filename, const String &version, const ProgressLogger &logger) | MzQuantMLHandler | |
| MzQuantMLHandler() | MzQuantMLHandler | private |
| MzQuantMLHandler(const MzQuantMLHandler &rhs) | MzQuantMLHandler | private |
| numden_r_ids_ | MzQuantMLHandler | private |
| open_tags_ | XMLHandler | protected |
| operator=(const MzQuantMLHandler &rhs) | MzQuantMLHandler | private |
| optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| r_r_obj_ | MzQuantMLHandler | private |
| r_rtemp_ | MzQuantMLHandler | private |
| reset() | XMLHandler | |
| setLoadDetail(const LOADDETAIL d) | XMLHandler | virtual |
| sm_ | XMLHandler | protected |
| startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) override | MzQuantMLHandler | |
| STORE enum value | XMLHandler | |
| tag_ | MzQuantMLHandler | protected |
| up_stack_ | MzQuantMLHandler | private |
| version_ | XMLHandler | protected |
| warning(const xercesc::SAXParseException &exception) override | XMLHandler | |
| warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| writeCVParams_(String &s, const Map< String, std::vector< CVTerm > > &, UInt indent) | MzQuantMLHandler | protected |
| writeFeature_(String &feature_xml, const std::vector< FeatureMap > &fm, UInt indentation_level) | MzQuantMLHandler | protected |
| writeTo(std::ostream &os) override | MzQuantMLHandler | virtual |
| writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected |
| writeUserParams_(std::ostream &os, const MetaInfoInterface &meta, UInt indent) | MzQuantMLHandler | protected |
| writeUserParams_(String &s, const MetaInfoInterface &meta, UInt indent) | MzQuantMLHandler | protected |
| writeXMLEscape(const String &to_escape) | XMLHandler | inlinestatic |
| XMLHandler(const String &filename, const String &version) | XMLHandler | |
| XMLHandler() | XMLHandler | private |
| ~MzQuantMLHandler() override | MzQuantMLHandler | |
| ~XMLHandler() override | XMLHandler |
1.9.1
