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OpenMS
2.8.0
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This is the complete list of members for XQuestResultXMLHandler, including all inherited members.
| accessions_ | XQuestResultXMLHandler | private |
| ActionMode enum name | XMLHandler | |
| addMetaValues_(MetaInfoInterface &meta_info_interface) | XQuestResultXMLHandler | private |
| asBool_(const String &in) const | XMLHandler | inlineprotected |
| asDateTime_(String date_string) const | XMLHandler | inlineprotected |
| asDouble_(const String &in) const | XMLHandler | inlineprotected |
| asFloat_(const String &in) const | XMLHandler | inlineprotected |
| asInt_(const String &in) const | XMLHandler | inlineprotected |
| asInt_(const XMLCh *in) const | XMLHandler | inlineprotected |
| asUInt_(const String &in) const | XMLHandler | inlineprotected |
| attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| characters(const XMLCh *const chars, const XMLSize_t length) override | XMLHandler | |
| charges_ | XQuestResultXMLHandler | private |
| checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) const | XMLHandler | |
| cpep_id_ | XQuestResultXMLHandler | private |
| cpro_id_ | XQuestResultXMLHandler | private |
| cross_linker_name_ | XQuestResultXMLHandler | private |
| current_spectrum_search_ | XQuestResultXMLHandler | private |
| cv_terms_ | XMLHandler | protected |
| cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | protected |
| decoy_string_ | XQuestResultXMLHandler | private |
| endElement(const XMLCh *const uri, const XMLCh *const local_name, const XMLCh *const qname) override | XQuestResultXMLHandler | |
| enzymes | XQuestResultXMLHandler | static |
| enzymes_db_ | XQuestResultXMLHandler | private |
| equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inlineprotected |
| error(const xercesc::SAXParseException &exception) override | XMLHandler | |
| error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| error_message_ | XMLHandler | mutableprotected |
| errorString() | XMLHandler | |
| expectList_(const String &str) const | XMLHandler | inlineprivate |
| extractDateTime_(const String &xquest_datetime_string, DateTime &date_time) const | XQuestResultXMLHandler | inlineprivate |
| fatalError(const xercesc::SAXParseException &exception) override | XMLHandler | |
| fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| file_ | XMLHandler | protected |
| getLinkPosition_(const xercesc::Attributes &attributes, std::pair< SignedSize, SignedSize > &pair) | XQuestResultXMLHandler | private |
| getLoadDetail() const | XMLHandler | virtual |
| getMaxScore() const | XQuestResultXMLHandler | |
| getMinScore() const | XQuestResultXMLHandler | |
| getNumberOfHits() const | XQuestResultXMLHandler | |
| is_openpepxl_ | XQuestResultXMLHandler | private |
| LD_ALLDATA enum value | XMLHandler | |
| LD_COUNTS_WITHOPTIONS enum value | XMLHandler | |
| LD_RAWCOUNTS enum value | XMLHandler | |
| LOAD enum value | XMLHandler | |
| load_detail_ | XMLHandler | protected |
| LOADDETAIL enum name | XMLHandler | |
| max_precursor_charge_ | XQuestResultXMLHandler | private |
| max_score_ | XQuestResultXMLHandler | private |
| min_precursor_charge_ | XQuestResultXMLHandler | private |
| min_score_ | XQuestResultXMLHandler | private |
| months | XQuestResultXMLHandler | static |
| ms_run_path_ | XQuestResultXMLHandler | private |
| mz_heavy_ | XQuestResultXMLHandler | private |
| mz_light_ | XQuestResultXMLHandler | private |
| n_hits_ | XQuestResultXMLHandler | private |
| open_tags_ | XMLHandler | protected |
| optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| pep_ids_ | XQuestResultXMLHandler | private |
| peptide_id_meta_values_ | XQuestResultXMLHandler | private |
| prot_ids_ | XQuestResultXMLHandler | private |
| reset() | XMLHandler | |
| rt_heavy_ | XQuestResultXMLHandler | private |
| rt_light_ | XQuestResultXMLHandler | private |
| setLoadDetail(const LOADDETAIL d) | XMLHandler | virtual |
| setPeptideEvidence_(const String &prot_string, PeptideHit &pep_hit) | XQuestResultXMLHandler | private |
| sm_ | XMLHandler | protected |
| spectrum_index_heavy_ | XQuestResultXMLHandler | private |
| spectrum_index_light_ | XQuestResultXMLHandler | private |
| spectrum_input_file_ | XQuestResultXMLHandler | private |
| splitByMiddle(const String &input, const char separator) | XQuestResultXMLHandler | static |
| splitByNth(const String &input, const char separator, const Size n) | XQuestResultXMLHandler | static |
| startElement(const XMLCh *const uri, const XMLCh *const local_name, const XMLCh *const qname, const xercesc::Attributes &attributes) override | XQuestResultXMLHandler | |
| STORE enum value | XMLHandler | |
| version_ | XMLHandler | protected |
| warning(const xercesc::SAXParseException &exception) override | XMLHandler | |
| warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| writeTo(std::ostream &os) override | XQuestResultXMLHandler | virtual |
| writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected |
| writeXMLEscape(const String &to_escape) | XMLHandler | inlinestatic |
| XMLHandler(const String &filename, const String &version) | XMLHandler | |
| XMLHandler() | XMLHandler | private |
| XQuestResultXMLHandler(const String &filename, std::vector< PeptideIdentification > &pep_ids, std::vector< ProteinIdentification > &prot_ids) | XQuestResultXMLHandler | |
| XQuestResultXMLHandler(const std::vector< ProteinIdentification > &pro_id, const std::vector< PeptideIdentification > &pep_id, const String &filename, const String &version) | XQuestResultXMLHandler | |
| ~XMLHandler() override | XMLHandler | |
| ~XQuestResultXMLHandler() override | XQuestResultXMLHandler |
1.9.1
