OpenMS  2.8.0
MetaboTargetedAssay Member List

This is the complete list of members for MetaboTargetedAssay, including all inherited members.

buildAmbiguityGroup(const std::vector< MetaboTargetedAssay > &v_mta, const double &ar_mz_tol, const double &ar_rt_tol, const String &ar_mz_tol_unit_res, size_t in_files_size)MetaboTargetedAssaystatic
compound_adductMetaboTargetedAssay
compound_fileMetaboTargetedAssay
compound_nameMetaboTargetedAssay
compound_rtMetaboTargetedAssay
extractMetaboTargetedAssay(const MSExperiment &spectra, const FeatureMapping::FeatureToMs2Indices &feature_ms2_index, const double &precursor_rt_tol, const double &precursor_mz_distance, const double &cosine_sim_threshold, const double &transition_threshold, const double &min_fragment_mz, const double &max_fragment_mz, const bool &method_consensus_spectrum, const bool &exclude_ms2_precursor, const unsigned int &file_counter)MetaboTargetedAssaystatic
extractMetaboTargetedAssayFragmentAnnotation(const std::vector< CompoundTargetDecoyPair > &v_cmp_spec, const double &transition_threshold, const double &min_fragment_mz, const double &max_fragment_mz, const bool &use_exact_mass, const bool &exclude_ms2_precursor, const unsigned int &file_counter)MetaboTargetedAssaystatic
filterBasedOnMolFormAdductOccurrence_(std::vector< MetaboTargetedAssay > &mta)MetaboTargetedAssayprotectedstatic
filterBasedOnTotalOccurrence_(std::vector< MetaboTargetedAssay > &mta, double total_occurrence_filter, size_t in_files_size)MetaboTargetedAssayprotectedstatic
getChargeFromAdduct_(const String &adduct)MetaboTargetedAssayprotectedstatic
intensityLess_(Peak1D a, Peak1D b)MetaboTargetedAssayprotectedstatic
molecular_formulaMetaboTargetedAssay
noise_threshold_constant_MetaboTargetedAssayprotectedstatic
pairCompoundWithAnnotatedSpectra(const std::vector< SiriusMSFile::CompoundInfo > &v_cmpinfo, const std::vector< SiriusFragmentAnnotation::SiriusTargetDecoySpectra > &annotated_spectra)MetaboTargetedAssaystatic
potential_cmpMetaboTargetedAssay
potential_rmtsMetaboTargetedAssay
precursor_intMetaboTargetedAssay
precursor_mzMetaboTargetedAssay
resolveAmbiguityGroup(std::unordered_map< UInt64, std::vector< MetaboTargetedAssay > > &map_mta_filter, const double &total_occurrence_filter, size_t in_files_size)MetaboTargetedAssaystatic
sortByPrecursorInt(std::vector< MetaboTargetedAssay > &vec_mta)MetaboTargetedAssayprotectedstatic
transition_quality_scoreMetaboTargetedAssay