OpenMS  2.8.0
ModificationDefinitionsSet Member List

This is the complete list of members for ModificationDefinitionsSet, including all inherited members.

addMatches_(std::multimap< double, ModificationDefinition > &matches, double mass, const String &residue, ResidueModification::TermSpecificity term_spec, const std::set< ModificationDefinition > &source, bool is_delta, double tolerance)ModificationDefinitionsSetprotectedstatic
addModification(const ModificationDefinition &mod_def)ModificationDefinitionsSet
findMatches(std::multimap< double, ModificationDefinition > &matches, double mass, const String &residue="", ResidueModification::TermSpecificity term_spec=ResidueModification::NUMBER_OF_TERM_SPECIFICITY, bool consider_fixed=true, bool consider_variable=true, bool is_delta=true, double tolerance=0.01) constModificationDefinitionsSet
fixed_mods_ModificationDefinitionsSetprotected
getFixedModificationNames() constModificationDefinitionsSet
getFixedModifications() constModificationDefinitionsSet
getMaxModifications() constModificationDefinitionsSet
getModificationNames() constModificationDefinitionsSet
getModificationNames(StringList &fixed_modifications, StringList &variable_modifications) constModificationDefinitionsSet
getModifications() constModificationDefinitionsSet
getNumberOfFixedModifications() constModificationDefinitionsSet
getNumberOfModifications() constModificationDefinitionsSet
getNumberOfVariableModifications() constModificationDefinitionsSet
getVariableModificationNames() constModificationDefinitionsSet
getVariableModifications() constModificationDefinitionsSet
inferFromPeptides(const std::vector< PeptideIdentification > &peptides)ModificationDefinitionsSet
isCompatible(const AASequence &peptide) constModificationDefinitionsSet
max_mods_per_peptide_ModificationDefinitionsSetprotected
ModificationDefinitionsSet()ModificationDefinitionsSet
ModificationDefinitionsSet(const ModificationDefinitionsSet &rhs)ModificationDefinitionsSet
ModificationDefinitionsSet(const StringList &fixed_modifications, const StringList &variable_modifications)ModificationDefinitionsSet
operator!=(const ModificationDefinitionsSet &rhs) constModificationDefinitionsSet
operator=(const ModificationDefinitionsSet &element)ModificationDefinitionsSet
operator==(const ModificationDefinitionsSet &rhs) constModificationDefinitionsSet
setMaxModifications(Size max_mod)ModificationDefinitionsSet
setModifications(const std::set< ModificationDefinition > &mod_defs)ModificationDefinitionsSet
setModifications(const String &fixed_modifications, const String &variable_modifications)ModificationDefinitionsSet
setModifications(const StringList &fixed_modifications, const StringList &variable_modifications)ModificationDefinitionsSet
variable_mods_ModificationDefinitionsSetprotected
~ModificationDefinitionsSet()ModificationDefinitionsSetvirtual