OpenMS  2.8.0
ProteaseDB Member List

This is the complete list of members for ProteaseDB, including all inherited members.

addEnzyme_(const DigestionEnzymeProtein *enzyme)DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >inlineprotected
beginEnzyme() constDigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >inline
const_enzymes_DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >protected
ConstEnzymeIterator typedefDigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >
DigestionEnzymeDB(const String &db_file="")DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >inlineprotected
DigestionEnzymeDB(const DigestionEnzymeDB &enzymes_db)=deleteDigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >protected
DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > classProteaseDBfriend
endEnzyme() constDigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >inline
enzyme_names_DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >protected
enzyme_regex_DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >protected
EnzymeIterator typedefDigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >
getAllCometNames(std::vector< String > &all_names) constProteaseDB
getAllCruxNames(std::vector< String > &all_names) constProteaseDB
getAllMSGFNames(std::vector< String > &all_names) constProteaseDB
getAllNames(std::vector< String > &all_names) constDigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >inline
getAllOMSSANames(std::vector< String > &all_names) constProteaseDB
getAllXTandemNames(std::vector< String > &all_names) constProteaseDB
getEnzyme(const String &name) constDigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >inline
getEnzymeByRegEx(const String &cleavage_regex) constDigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >inline
getInstance()DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >inlinestatic
hasEnzyme(const String &name) constDigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >inline
hasEnzyme(const DigestionEnzymeProtein *enzyme) constDigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >inline
hasRegEx(const String &cleavage_regex) constDigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >inline
operator=(const DigestionEnzymeDB &enzymes_db)=deleteDigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >protected
parseEnzyme_(Map< String, String > &values) constDigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >inlineprotected
ProteaseDB()ProteaseDBprotected
readEnzymesFromFile_(const String &filename)DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >inlineprotected
writeTSV(const String &filename)ProteaseDB
~DigestionEnzymeDB()DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB >inlinevirtual