OpenMS  2.8.0
ProteinIdentification Member List

This is the complete list of members for ProteinIdentification, including all inherited members.

addMetaValues(const MetaInfoInterface &from)MetaInfoInterface
addPrimaryMSRunPath(const String &s, bool raw=false)ProteinIdentification
addPrimaryMSRunPath(const StringList &s, bool raw=false)ProteinIdentification
assignRanks()ProteinIdentification
AVERAGE enum valueProteinIdentification
clearMetaInfo()MetaInfoInterface
computeCoverage(const std::vector< PeptideIdentification > &pep_ids)ProteinIdentification
computeModifications(const std::vector< PeptideIdentification > &pep_ids, const StringList &skip_modifications)ProteinIdentification
createIfNotExists_()MetaInfoInterfaceinlineprotected
date_ProteinIdentificationprotected
fillIndistinguishableGroupsWithSingletons()ProteinIdentification
findHit(const String &accession)ProteinIdentification
getDateTime() constProteinIdentification
getHits() constProteinIdentification
getHits()ProteinIdentification
getIdentifier() constProteinIdentification
getIndistinguishableProteins() constProteinIdentification
getIndistinguishableProteins()ProteinIdentification
getInferenceEngine() constProteinIdentification
getInferenceEngineVersion() constProteinIdentification
getKeys(std::vector< String > &keys) constMetaInfoInterface
getKeys(std::vector< UInt > &keys) constMetaInfoInterface
getMetaValue(const String &name, const DataValue &default_value=DataValue::EMPTY) constMetaInfoInterface
getMetaValue(UInt index, const DataValue &default_value=DataValue::EMPTY) constMetaInfoInterface
getOriginalSearchEngineName() constProteinIdentification
getPrimaryMSRunPath(StringList &output, bool raw=false) constProteinIdentification
getProteinGroups() constProteinIdentification
getProteinGroups()ProteinIdentification
getScoreType() constProteinIdentification
getSearchEngine() constProteinIdentification
getSearchEngineSettingsAsPairs(const String &se="") constProteinIdentification
getSearchEngineVersion() constProteinIdentification
getSearchParameters() constProteinIdentification
getSearchParameters()ProteinIdentification
getSignificanceThreshold() constProteinIdentification
hasInferenceData() constProteinIdentification
hasInferenceEngineAsSearchEngine() constProteinIdentification
higher_score_better_ProteinIdentificationprotected
HitType typedefProteinIdentification
id_ProteinIdentificationprotected
indistinguishable_proteins_ProteinIdentificationprotected
insertHit(const ProteinHit &input)ProteinIdentification
insertHit(ProteinHit &&input)ProteinIdentification
insertIndistinguishableProteins(const ProteinGroup &group)ProteinIdentification
insertProteinGroup(const ProteinGroup &group)ProteinIdentification
isHigherScoreBetter() constProteinIdentification
isMetaEmpty() constMetaInfoInterface
meta_MetaInfoInterfaceprotected
MetaInfoInterface()MetaInfoInterface
MetaInfoInterface(const MetaInfoInterface &rhs)MetaInfoInterface
MetaInfoInterface(MetaInfoInterface &&) noexceptMetaInfoInterface
metaRegistry()MetaInfoInterfacestatic
metaValueExists(const String &name) constMetaInfoInterface
metaValueExists(UInt index) constMetaInfoInterface
MONOISOTOPIC enum valueProteinIdentification
NamesOfPeakMassTypeProteinIdentificationstatic
nrPrimaryMSRunPaths(bool raw=false) constProteinIdentification
operator!=(const ProteinIdentification &rhs) constProteinIdentification
OpenMS::MetaInfoInterface::operator!=(const MetaInfoInterface &rhs) constMetaInfoInterface
operator=(const ProteinIdentification &)=defaultProteinIdentification
operator=(ProteinIdentification &&)=defaultProteinIdentification
OpenMS::MetaInfoInterface::operator=(const MetaInfoInterface &rhs)MetaInfoInterface
OpenMS::MetaInfoInterface::operator=(MetaInfoInterface &&) noexceptMetaInfoInterface
operator==(const ProteinIdentification &rhs) constProteinIdentification
OpenMS::MetaInfoInterface::operator==(const MetaInfoInterface &rhs) constMetaInfoInterface
PeakMassType enum nameProteinIdentification
peptideIDsMergeable(const ProteinIdentification &id_run, const String &experiment_type) constProteinIdentification
protein_groups_ProteinIdentificationprotected
protein_hits_ProteinIdentificationprotected
protein_score_type_ProteinIdentificationprotected
protein_significance_threshold_ProteinIdentificationprotected
ProteinIdentification()ProteinIdentification
ProteinIdentification(const ProteinIdentification &)=defaultProteinIdentification
ProteinIdentification(ProteinIdentification &&)=defaultProteinIdentification
removeMetaValue(const String &name)MetaInfoInterface
removeMetaValue(UInt index)MetaInfoInterface
search_engine_ProteinIdentificationprotected
search_engine_version_ProteinIdentificationprotected
search_parameters_ProteinIdentificationprotected
setDateTime(const DateTime &date)ProteinIdentification
setHigherScoreBetter(bool higher_is_better)ProteinIdentification
setHits(const std::vector< ProteinHit > &hits)ProteinIdentification
setIdentifier(const String &id)ProteinIdentification
setInferenceEngine(const String &search_engine)ProteinIdentification
setInferenceEngineVersion(const String &inference_engine_version)ProteinIdentification
setMetaValue(const String &name, const DataValue &value)MetaInfoInterface
setMetaValue(UInt index, const DataValue &value)MetaInfoInterface
setPrimaryMSRunPath(const StringList &s, bool raw=false)ProteinIdentification
setPrimaryMSRunPath(const StringList &s, MSExperiment &e)ProteinIdentification
setScoreType(const String &type)ProteinIdentification
setSearchEngine(const String &search_engine)ProteinIdentification
setSearchEngineVersion(const String &search_engine_version)ProteinIdentification
setSearchParameters(const SearchParameters &search_parameters)ProteinIdentification
setSearchParameters(SearchParameters &&search_parameters)ProteinIdentification
setSignificanceThreshold(double value)ProteinIdentification
SIZE_OF_PEAKMASSTYPE enum valueProteinIdentification
sort()ProteinIdentification
swap(MetaInfoInterface &rhs)MetaInfoInterface
~MetaInfoInterface()MetaInfoInterface
~ProteinIdentification()ProteinIdentificationvirtual
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