OpenMS  2.8.0
QcMLFile Member List

This is the complete list of members for QcMLFile, including all inherited members.

ActionMode enum nameXMLHandler
addRunAttachment(String r, Attachment at)QcMLFile
addRunQualityParameter(String r, QualityParameter qp)QcMLFile
addSetAttachment(String r, Attachment at)QcMLFile
addSetQualityParameter(String r, QualityParameter qp)QcMLFile
asBool_(const String &in) constXMLHandlerinlineprotected
asDateTime_(String date_string) constXMLHandlerinlineprotected
asDouble_(const String &in) constXMLHandlerinlineprotected
asFloat_(const String &in) constXMLHandlerinlineprotected
asInt_(const String &in) constXMLHandlerinlineprotected
asInt_(const XMLCh *in) constXMLHandlerinlineprotected
asUInt_(const String &in) constXMLHandlerinlineprotected
at_QcMLFileprotected
ats_QcMLFileprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
characters(const XMLCh *const chars, const XMLSize_t length) overrideQcMLFileprotected
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) constXMLHandler
CMD enum valueProgressLogger
collectQCData(std::vector< ProteinIdentification > &prot_ids, std::vector< PeptideIdentification > &pep_ids, const FeatureMap &feature_map, const ConsensusMap &consensus_map, const String &inputfile_raw, const bool remove_duplicate_features, const MSExperiment &exp)QcMLFile
collectSetParameter(const String setname, const String qp, std::vector< String > &ret)QcMLFile
current_logger_ProgressLoggermutableprotected
cv_terms_XMLHandlerprotected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)XMLHandlerprotected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) overrideQcMLFileprotected
endProgress() constProgressLogger
enforced_encoding_XMLFileprotected
enforceEncoding_(const String &encoding)XMLFileprotected
equal_(const XMLCh *a, const XMLCh *b) constXMLHandlerinlineprotected
error(const xercesc::SAXParseException &exception) overrideXMLHandler
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
error_message_XMLHandlermutableprotected
errorString()XMLHandler
existsRun(const String filename, bool checkname=false) constQcMLFile
existsRunQualityParameter(const String filename, const String qpname, std::vector< String > &ids) constQcMLFile
existsSet(const String filename, bool checkname=false) constQcMLFile
existsSetQualityParameter(const String filename, const String qpname, std::vector< String > &ids) constQcMLFile
expectList_(const String &str) constXMLHandlerinlineprivate
exportAttachment(const String filename, const String qpname) constQcMLFile
exportIDstats(const String &filename) constQcMLFile
exportQP(const String filename, const String qpname) constQcMLFile
exportQPs(const String filename, const StringList qpnames) constQcMLFile
fatalError(const xercesc::SAXParseException &exception) overrideXMLHandler
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
file_XMLHandlerprotected
getLoadDetail() constXMLHandlervirtual
getLogType() constProgressLogger
getRunIDs(std::vector< String > &ids) constQcMLFile
getRunNames(std::vector< String > &ids) constQcMLFile
getVersion() constXMLFile
GUI enum valueProgressLogger
header_QcMLFileprotected
isValid(const String &filename, std::ostream &os)XMLFile
last_invoke_ProgressLoggermutableprotected
LD_ALLDATA enum valueXMLHandler
LD_COUNTS_WITHOPTIONS enum valueXMLHandler
LD_RAWCOUNTS enum valueXMLHandler
LOAD enum valueXMLHandler
load(const String &filename)QcMLFile
load_detail_XMLHandlerprotected
LOADDETAIL enum nameXMLHandler
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
map2csv(const std::map< String, std::map< String, String > > &cvs_table, const String &separator) constQcMLFile
merge(const QcMLFile &addendum, String setname="")QcMLFile
name_QcMLFileprotected
names_QcMLFileprotected
nextProgress() constProgressLogger
NONE enum valueProgressLogger
open_tags_XMLHandlerprotected
operator=(const ProgressLogger &other)ProgressLogger
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
parse_(const String &filename, XMLHandler *handler)XMLFileprotected
parseBuffer_(const std::string &buffer, XMLHandler *handler)XMLFileprotected
progress_QcMLFileprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
QcMLFile()QcMLFile
qp_QcMLFileprotected
qps_QcMLFileprotected
recursion_depth_ProgressLoggerprotectedstatic
registerRun(const String id, const String name)QcMLFile
registerSet(const String id, const String name, const std::set< String > &names)QcMLFile
removeAllAttachments(String at)QcMLFile
removeAttachment(String r, std::vector< String > &ids, String at="")QcMLFile
removeAttachment(String r, String at)QcMLFile
removeQualityParameter(String r, std::vector< String > &ids)QcMLFile
reset()XMLHandler
row_QcMLFileprotected
run_id_QcMLFileprotected
run_Name_ID_map_QcMLFileprotected
runQualityAts_QcMLFileprotected
runQualityQPs_QcMLFileprotected
save_(const String &filename, XMLHandler *handler) constXMLFileprotected
schema_location_XMLFileprotected
schema_version_XMLFileprotected
set_Name_ID_map_QcMLFileprotected
setLoadDetail(const LOADDETAIL d)XMLHandlervirtual
setLogType(LogType type) constProgressLogger
setProgress(SignedSize value) constProgressLogger
setQualityAts_QcMLFileprotected
setQualityQPs_QcMLFileprotected
setQualityQPs_members_QcMLFileprotected
sm_XMLHandlerprotected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) overrideQcMLFileprotected
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
STORE enum valueXMLHandler
store(const String &filename) constQcMLFile
tag_QcMLFileprotected
type_ProgressLoggermutableprotected
version_XMLHandlerprotected
warning(const xercesc::SAXParseException &exception) overrideXMLHandler
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
writeTo(std::ostream &)XMLHandlervirtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) constXMLHandlerprotected
writeXMLEscape(const String &to_escape)XMLHandlerinlinestatic
XMLFile()XMLFile
XMLFile(const String &schema_location, const String &version)XMLFile
XMLHandler(const String &filename, const String &version)XMLHandler
XMLHandler()XMLHandlerprivate
~ProgressLogger()ProgressLoggervirtual
~QcMLFile() overrideQcMLFile
~XMLFile()XMLFilevirtual
~XMLHandler() overrideXMLHandler