Residue Member List

This is the complete list of members for Residue, including all inherited members.

addLossFormula(const EmpiricalFormula &)	Residue
addLossName(const String &name)	Residue
addNTermLossFormula(const EmpiricalFormula &)	Residue
addNTermLossName(const String &name)	Residue
addResidueSet(const String &residue_sets)	Residue
addSynonym(const String &synonym)	Residue
AIon enum value	Residue
average_weight_	Residue	protected
BIon enum value	Residue
BIonMinusH20 enum value	Residue
BIonMinusNH3 enum value	Residue
CIon enum value	Residue
CTerminal enum value	Residue
formula_	Residue	protected
Full enum value	Residue
gb_bb_l_	Residue	protected
gb_bb_r_	Residue	protected
gb_sc_	Residue	protected
getAverageWeight(ResidueType res_type=Full) const	Residue
getBackboneBasicityLeft() const	Residue
getBackboneBasicityRight() const	Residue
getFormula(ResidueType res_type=Full) const	Residue
getInternalToAIon()	Residue	inlinestatic
getInternalToBIon()	Residue	inlinestatic
getInternalToCIon()	Residue	inlinestatic
getInternalToCTerm()	Residue	inlinestatic
getInternalToFull()	Residue	inlinestatic
getInternalToNTerm()	Residue	inlinestatic
getInternalToXIon()	Residue	inlinestatic
getInternalToYIon()	Residue	inlinestatic
getInternalToZIon()	Residue	inlinestatic
getLossFormulas() const	Residue
getLossNames() const	Residue
getLowMassIons() const	Residue
getModification() const	Residue
getModificationName() const	Residue
getMonoWeight(ResidueType res_type=Full) const	Residue
getName() const	Residue
getNTermLossFormulas() const	Residue
getNTermLossNames() const	Residue
getOneLetterCode() const	Residue
getPiValue() const	Residue
getPka() const	Residue
getPkb() const	Residue
getPkc() const	Residue
getResidueSets() const	Residue
getResidueTypeName(const ResidueType res_type)	Residue	static
getSideChainBasicity() const	Residue
getSynonyms() const	Residue
getThreeLetterCode() const	Residue
hasNeutralLoss() const	Residue
hasNTermNeutralLosses() const	Residue
Internal enum value	Residue
internal_formula_	Residue	protected
internal_to_a_monoweight_	Residue	protected
internal_to_b_monoweight_	Residue	protected
internal_to_c_monoweight_	Residue	protected
internal_to_cterm_monoweight_	Residue	protected
internal_to_full_monoweight_	Residue	protected
internal_to_nterm_monoweight_	Residue	protected
internal_to_x_monoweight_	Residue	protected
internal_to_y_monoweight_	Residue	protected
internal_to_z_monoweight_	Residue	protected
isInResidueSet(const String &residue_set)	Residue
isModified() const	Residue
loss_average_weight_	Residue	protected
loss_formulas_	Residue	protected
loss_mono_weight_	Residue	protected
loss_names_	Residue	protected
low_mass_ions_	Residue	protected
modification_	Residue	protected
mono_weight_	Residue	protected
name_	Residue	protected
NonIdentified enum value	Residue
NTerm_loss_formulas_	Residue	protected
NTerm_loss_names_	Residue	protected
NTerminal enum value	Residue
one_letter_code_	Residue	protected
operator!=(const Residue &residue) const	Residue
operator!=(char one_letter_code) const	Residue
operator<<(std::ostream &os, const Residue &residue)	Residue	friend
operator=(const Residue &)=default	Residue
operator=(Residue &&) &=default	Residue
operator==(const Residue &residue) const	Residue
operator==(char one_letter_code) const	Residue
pka_	Residue	protected
pkb_	Residue	protected
pkc_	Residue	protected
Precursor enum value	Residue
Residue()	Residue
Residue(const Residue &)=default	Residue
Residue(Residue &&)=default	Residue
Residue(const String &name, const String &three_letter_code, const String &one_letter_code, const EmpiricalFormula &formula, double pka=0, double pkb=0, double pkc=-1, double gb_sc=0, double gb_bb_l=0, double gb_bb_r=0, const std::set< String > &synonyms=std::set< String >())	Residue
residue_sets_	Residue	protected
ResidueDB class	Residue	friend
ResidueType enum name	Residue
residueTypeToIonLetter(const ResidueType &res_type)	Residue	static
setAverageWeight(double weight)	Residue
setBackboneBasicityLeft(double gb_bb_l)	Residue
setBackboneBasicityRight(double gb_bb_r)	Residue
setFormula(const EmpiricalFormula &formula)	Residue
setLossFormulas(const std::vector< EmpiricalFormula > &)	Residue
setLossNames(const std::vector< String > &name)	Residue
setLowMassIons(const std::vector< EmpiricalFormula > &low_mass_ions)	Residue
setModification(const String &name)	Residue
setModification(const ResidueModification *mod)	Residue
setModification(const ResidueModification &mod)	Residue
setModificationByDiffMonoMass(double diffMonoMass)	Residue
setMonoWeight(double weight)	Residue
setName(const String &name)	Residue
setNTermLossFormulas(const std::vector< EmpiricalFormula > &)	Residue
setNTermLossNames(const std::vector< String > &name)	Residue
setOneLetterCode(const String &one_letter_code)	Residue
setPka(double value)	Residue
setPkb(double value)	Residue
setPkc(double value)	Residue
setResidueSets(const std::set< String > &residues_sets)	Residue
setSideChainBasicity(double gb_sc)	Residue
setSynonyms(const std::set< String > &synonyms)	Residue
setThreeLetterCode(const String &three_letter_code)	Residue
SizeOfResidueType enum value	Residue
synonyms_	Residue	protected
three_letter_code_	Residue	protected
toString() const	Residue
Unannotated enum value	Residue
XIon enum value	Residue
YIon enum value	Residue
YIonMinusH20 enum value	Residue
YIonMinusNH3 enum value	Residue
ZIon enum value	Residue
~Residue()	Residue	virtual