OpenMS  2.8.0
Residue Member List

This is the complete list of members for Residue, including all inherited members.

addLossFormula(const EmpiricalFormula &)Residue
addLossName(const String &name)Residue
addNTermLossFormula(const EmpiricalFormula &)Residue
addNTermLossName(const String &name)Residue
addResidueSet(const String &residue_sets)Residue
addSynonym(const String &synonym)Residue
AIon enum valueResidue
average_weight_Residueprotected
BIon enum valueResidue
BIonMinusH20 enum valueResidue
BIonMinusNH3 enum valueResidue
CIon enum valueResidue
CTerminal enum valueResidue
formula_Residueprotected
Full enum valueResidue
gb_bb_l_Residueprotected
gb_bb_r_Residueprotected
gb_sc_Residueprotected
getAverageWeight(ResidueType res_type=Full) constResidue
getBackboneBasicityLeft() constResidue
getBackboneBasicityRight() constResidue
getFormula(ResidueType res_type=Full) constResidue
getInternalToAIon()Residueinlinestatic
getInternalToBIon()Residueinlinestatic
getInternalToCIon()Residueinlinestatic
getInternalToCTerm()Residueinlinestatic
getInternalToFull()Residueinlinestatic
getInternalToNTerm()Residueinlinestatic
getInternalToXIon()Residueinlinestatic
getInternalToYIon()Residueinlinestatic
getInternalToZIon()Residueinlinestatic
getLossFormulas() constResidue
getLossNames() constResidue
getLowMassIons() constResidue
getModification() constResidue
getModificationName() constResidue
getMonoWeight(ResidueType res_type=Full) constResidue
getName() constResidue
getNTermLossFormulas() constResidue
getNTermLossNames() constResidue
getOneLetterCode() constResidue
getPiValue() constResidue
getPka() constResidue
getPkb() constResidue
getPkc() constResidue
getResidueSets() constResidue
getResidueTypeName(const ResidueType res_type)Residuestatic
getSideChainBasicity() constResidue
getSynonyms() constResidue
getThreeLetterCode() constResidue
hasNeutralLoss() constResidue
hasNTermNeutralLosses() constResidue
Internal enum valueResidue
internal_formula_Residueprotected
internal_to_a_monoweight_Residueprotected
internal_to_b_monoweight_Residueprotected
internal_to_c_monoweight_Residueprotected
internal_to_cterm_monoweight_Residueprotected
internal_to_full_monoweight_Residueprotected
internal_to_nterm_monoweight_Residueprotected
internal_to_x_monoweight_Residueprotected
internal_to_y_monoweight_Residueprotected
internal_to_z_monoweight_Residueprotected
isInResidueSet(const String &residue_set)Residue
isModified() constResidue
loss_average_weight_Residueprotected
loss_formulas_Residueprotected
loss_mono_weight_Residueprotected
loss_names_Residueprotected
low_mass_ions_Residueprotected
modification_Residueprotected
mono_weight_Residueprotected
name_Residueprotected
NonIdentified enum valueResidue
NTerm_loss_formulas_Residueprotected
NTerm_loss_names_Residueprotected
NTerminal enum valueResidue
one_letter_code_Residueprotected
operator!=(const Residue &residue) constResidue
operator!=(char one_letter_code) constResidue
operator<<(std::ostream &os, const Residue &residue)Residuefriend
operator=(const Residue &)=defaultResidue
operator=(Residue &&) &=defaultResidue
operator==(const Residue &residue) constResidue
operator==(char one_letter_code) constResidue
pka_Residueprotected
pkb_Residueprotected
pkc_Residueprotected
Precursor enum valueResidue
Residue()Residue
Residue(const Residue &)=defaultResidue
Residue(Residue &&)=defaultResidue
Residue(const String &name, const String &three_letter_code, const String &one_letter_code, const EmpiricalFormula &formula, double pka=0, double pkb=0, double pkc=-1, double gb_sc=0, double gb_bb_l=0, double gb_bb_r=0, const std::set< String > &synonyms=std::set< String >())Residue
residue_sets_Residueprotected
ResidueDB classResiduefriend
ResidueType enum nameResidue
residueTypeToIonLetter(const ResidueType &res_type)Residuestatic
setAverageWeight(double weight)Residue
setBackboneBasicityLeft(double gb_bb_l)Residue
setBackboneBasicityRight(double gb_bb_r)Residue
setFormula(const EmpiricalFormula &formula)Residue
setLossFormulas(const std::vector< EmpiricalFormula > &)Residue
setLossNames(const std::vector< String > &name)Residue
setLowMassIons(const std::vector< EmpiricalFormula > &low_mass_ions)Residue
setModification(const String &name)Residue
setModification(const ResidueModification *mod)Residue
setModification(const ResidueModification &mod)Residue
setModificationByDiffMonoMass(double diffMonoMass)Residue
setMonoWeight(double weight)Residue
setName(const String &name)Residue
setNTermLossFormulas(const std::vector< EmpiricalFormula > &)Residue
setNTermLossNames(const std::vector< String > &name)Residue
setOneLetterCode(const String &one_letter_code)Residue
setPka(double value)Residue
setPkb(double value)Residue
setPkc(double value)Residue
setResidueSets(const std::set< String > &residues_sets)Residue
setSideChainBasicity(double gb_sc)Residue
setSynonyms(const std::set< String > &synonyms)Residue
setThreeLetterCode(const String &three_letter_code)Residue
SizeOfResidueType enum valueResidue
synonyms_Residueprotected
three_letter_code_Residueprotected
toString() constResidue
Unannotated enum valueResidue
XIon enum valueResidue
YIon enum valueResidue
YIonMinusH20 enum valueResidue
YIonMinusNH3 enum valueResidue
ZIon enum valueResidue
~Residue()Residuevirtual