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OpenMS
2.8.0
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This is the complete list of members for SimpleTSGXLMS, including all inherited members.
| add_a_ions_ | SimpleTSGXLMS | protected |
| add_abundant_immonium_ions_ | SimpleTSGXLMS | protected |
| add_b_ions_ | SimpleTSGXLMS | protected |
| add_c_ions_ | SimpleTSGXLMS | protected |
| add_charges_ | SimpleTSGXLMS | protected |
| add_first_prefix_ion_ | SimpleTSGXLMS | protected |
| add_isotopes_ | SimpleTSGXLMS | protected |
| add_k_linked_ions_ | SimpleTSGXLMS | protected |
| add_losses_ | SimpleTSGXLMS | protected |
| add_precursor_peaks_ | SimpleTSGXLMS | protected |
| add_x_ions_ | SimpleTSGXLMS | protected |
| add_y_ions_ | SimpleTSGXLMS | protected |
| add_z_ions_ | SimpleTSGXLMS | protected |
| addKLinkedIonPeaks_(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, double precursor_mass, int charge) const | SimpleTSGXLMS | protectedvirtual |
| addLinearPeaks_(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, Residue::ResidueType res_type, std::vector< LossIndex > &forward_losses, std::vector< LossIndex > &backward_losses, int charge=1, Size link_pos_2=0) const | SimpleTSGXLMS | protectedvirtual |
| addLosses_(std::vector< SimplePeak > &spectrum, double mono_weight, int charge, LossIndex &losses) const | SimpleTSGXLMS | protectedvirtual |
| addPrecursorPeaks_(std::vector< SimplePeak > &spectrum, double precursor_mass, int charge) const | SimpleTSGXLMS | protectedvirtual |
| addXLinkIonPeaks_(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, double precursor_mass, Residue::ResidueType res_type, std::vector< LossIndex > &forward_losses, std::vector< LossIndex > &backward_losses, int charge, Size link_pos_2=0) const | SimpleTSGXLMS | protectedvirtual |
| addXLinkIonPeaks_(std::vector< SimplePeak > &spectrum, OPXLDataStructs::ProteinProteinCrossLink &crosslink, bool frag_alpha, Residue::ResidueType res_type, std::vector< LossIndex > &forward_losses, std::vector< LossIndex > &backward_losses, LossIndex &losses_peptide2, int charge) const | SimpleTSGXLMS | protectedvirtual |
| check_defaults_ | DefaultParamHandler | protected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| error_name_ | DefaultParamHandler | protected |
| getBackwardLosses_(AASequence &peptide) const | SimpleTSGXLMS | protected |
| getDefaults() const | DefaultParamHandler | |
| getForwardLosses_(AASequence &peptide) const | SimpleTSGXLMS | protected |
| getLinearIonSpectrum(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, int charge=1, Size link_pos_2=0) const | SimpleTSGXLMS | virtual |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| getXLinkIonSpectrum(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, double precursor_mass, int mincharge, int maxcharge, Size link_pos_2=0) const | SimpleTSGXLMS | virtual |
| getXLinkIonSpectrum(std::vector< SimplePeak > &spectrum, OPXLDataStructs::ProteinProteinCrossLink &crosslink, bool frag_alpha, int mincharge, int maxcharge) const | SimpleTSGXLMS | virtual |
| loss_db_ | SimpleTSGXLMS | protected |
| loss_H2O_ | SimpleTSGXLMS | protected |
| loss_NH3_ | SimpleTSGXLMS | protected |
| max_isotope_ | SimpleTSGXLMS | protected |
| operator=(const SimpleTSGXLMS &tsg) | SimpleTSGXLMS | |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| pre_int_ | SimpleTSGXLMS | protected |
| pre_int_H2O_ | SimpleTSGXLMS | protected |
| pre_int_NH3_ | SimpleTSGXLMS | protected |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| SimpleTSGXLMS() | SimpleTSGXLMS | |
| SimpleTSGXLMS(const SimpleTSGXLMS &source) | SimpleTSGXLMS | |
| subsections_ | DefaultParamHandler | protected |
| updateMembers_() override | SimpleTSGXLMS | virtual |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="") | DefaultParamHandler | static |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~SimpleTSGXLMS() override | SimpleTSGXLMS |
1.9.1
