OpenMS  2.8.0
SiriusAdapterAlgorithm Member List

This is the complete list of members for SiriusAdapterAlgorithm, including all inherited members.

callSiriusQProcess(const String &tmp_ms_file, const String &tmp_out_dir, String &executable, const String &out_csifingerid, const bool decoy_generation) constSiriusAdapterAlgorithm
check_defaults_DefaultParamHandlerprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
determineSiriusExecutable(String &executable)SiriusAdapterAlgorithmstatic
error_name_DefaultParamHandlerprotected
fingeridSiriusAdapterAlgorithmprivate
getDefaults() constDefaultParamHandler
getFilterByNumMassTraces() constSiriusAdapterAlgorithminline
getIsotopePatternIterations() constSiriusAdapterAlgorithminline
getName() constDefaultParamHandler
getNumberOfCSIFingerIDCandidates() constSiriusAdapterAlgorithminline
getNumberOfSiriusCandidates() constSiriusAdapterAlgorithminline
getParameters() constDefaultParamHandler
getPrecursorMzTolerance() constSiriusAdapterAlgorithminline
getPrecursorRtTolerance() constSiriusAdapterAlgorithminline
getSubsections() constDefaultParamHandler
hasFullNameParameter(const String &name) constSiriusAdapterAlgorithm
isFeatureOnly() constSiriusAdapterAlgorithminline
isNoMasstraceInfoIsotopePattern() constSiriusAdapterAlgorithminline
logFeatureSpectraNumber(const String &featureinfo, const FeatureMapping::FeatureToMs2Indices &feature_mapping, const MSExperiment &spectra) constSiriusAdapterAlgorithm
operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
passatuttoSiriusAdapterAlgorithmprivate
precursorMzToleranceUnitIsPPM() constSiriusAdapterAlgorithminline
preprocessingSiriusAdapterAlgorithmprivate
preprocessingSirius(const String &featureinfo, const MSExperiment &spectra, FeatureMapping::FeatureMappingInfo &fm_info, FeatureMapping::FeatureToMs2Indices &feature_mapping) constSiriusAdapterAlgorithm
projectSiriusAdapterAlgorithmprivate
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
siriusSiriusAdapterAlgorithmprivate
SiriusAdapterAlgorithm()SiriusAdapterAlgorithm
SiriusSubtool typedefSiriusAdapterAlgorithmprivate
sortSiriusWorkspacePathsByScanIndex(std::vector< String > &subdirs)SiriusAdapterAlgorithmstatic
subsections_DefaultParamHandlerprotected
updateExistingParameter(const Param &param)SiriusAdapterAlgorithm
updateMembers_()DefaultParamHandlerprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual