This is the complete list of members for SiriusAdapterAlgorithm, including all inherited members.
| callSiriusQProcess(const String &tmp_ms_file, const String &tmp_out_dir, String &executable, const String &out_csifingerid, const bool decoy_generation) const | SiriusAdapterAlgorithm | |
| check_defaults_ | DefaultParamHandler | protected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| determineSiriusExecutable(String &executable) | SiriusAdapterAlgorithm | static |
| error_name_ | DefaultParamHandler | protected |
| fingerid | SiriusAdapterAlgorithm | private |
| getDefaults() const | DefaultParamHandler | |
| getFilterByNumMassTraces() const | SiriusAdapterAlgorithm | inline |
| getIsotopePatternIterations() const | SiriusAdapterAlgorithm | inline |
| getName() const | DefaultParamHandler | |
| getNumberOfCSIFingerIDCandidates() const | SiriusAdapterAlgorithm | inline |
| getNumberOfSiriusCandidates() const | SiriusAdapterAlgorithm | inline |
| getParameters() const | DefaultParamHandler | |
| getPrecursorMzTolerance() const | SiriusAdapterAlgorithm | inline |
| getPrecursorRtTolerance() const | SiriusAdapterAlgorithm | inline |
| getSubsections() const | DefaultParamHandler | |
| hasFullNameParameter(const String &name) const | SiriusAdapterAlgorithm | |
| isFeatureOnly() const | SiriusAdapterAlgorithm | inline |
| isNoMasstraceInfoIsotopePattern() const | SiriusAdapterAlgorithm | inline |
| logFeatureSpectraNumber(const String &featureinfo, const FeatureMapping::FeatureToMs2Indices &feature_mapping, const MSExperiment &spectra) const | SiriusAdapterAlgorithm | |
| operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| passatutto | SiriusAdapterAlgorithm | private |
| precursorMzToleranceUnitIsPPM() const | SiriusAdapterAlgorithm | inline |
| preprocessing | SiriusAdapterAlgorithm | private |
| preprocessingSirius(const String &featureinfo, const MSExperiment &spectra, FeatureMapping::FeatureMappingInfo &fm_info, FeatureMapping::FeatureToMs2Indices &feature_mapping) const | SiriusAdapterAlgorithm | |
| project | SiriusAdapterAlgorithm | private |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| sirius | SiriusAdapterAlgorithm | private |
| SiriusAdapterAlgorithm() | SiriusAdapterAlgorithm | |
| SiriusSubtool typedef | SiriusAdapterAlgorithm | private |
| sortSiriusWorkspacePathsByScanIndex(std::vector< String > &subdirs) | SiriusAdapterAlgorithm | static |
| subsections_ | DefaultParamHandler | protected |
| updateExistingParameter(const Param ¶m) | SiriusAdapterAlgorithm | |
| updateMembers_() | DefaultParamHandler | protectedvirtual |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="") | DefaultParamHandler | static |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
1.9.1
