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OpenMS
2.8.0
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This is the complete list of members for SpectrumMetaDataLookup, including all inherited members.
| addEntry_(Size index, double rt, Int scan_number, const String &native_id) | SpectrumLookup | protected |
| addMissingRTsToPeptideIDs(std::vector< PeptideIdentification > &peptides, const String &filename, bool stop_on_error=false) | SpectrumMetaDataLookup | static |
| addMissingSpectrumReferences(std::vector< PeptideIdentification > &peptides, const String &filename, bool stop_on_error=false, bool override_spectra_data=false, bool override_spectra_references=false, std::vector< ProteinIdentification > proteins=std::vector< ProteinIdentification >()) | SpectrumMetaDataLookup | static |
| addReferenceFormat(const String ®exp) | SpectrumLookup | |
| default_scan_regexp | SpectrumLookup | static |
| empty() const | SpectrumLookup | |
| extractScanNumber(const String &native_id, const boost::regex &scan_regexp, bool no_error=false) | SpectrumLookup | static |
| extractScanNumber(const String &native_id, const String &native_id_type_accession) | SpectrumLookup | static |
| findByIndex(Size index, bool count_from_one=false) const | SpectrumLookup | |
| findByNativeID(const String &native_id) const | SpectrumLookup | |
| findByReference(const String &spectrum_ref) const | SpectrumLookup | |
| findByRegExpMatch_(const String &spectrum_ref, const String ®exp, const boost::smatch &match) const | SpectrumLookup | protected |
| findByRT(double rt) const | SpectrumLookup | |
| findByScanNumber(Size scan_number) const | SpectrumLookup | |
| getRegExFromNativeID(const String &id) | SpectrumLookup | static |
| getSpectrumMetaData(Size index, SpectrumMetaData &meta) const | SpectrumMetaDataLookup | |
| getSpectrumMetaData(const MSSpectrum &spectrum, SpectrumMetaData &meta, const boost::regex &scan_regexp=boost::regex(), const std::map< Size, double > &precursor_rts=(std::map< Size, double >())) | SpectrumMetaDataLookup | static |
| getSpectrumMetaData(const String &spectrum_ref, SpectrumMetaData &meta, MetaDataFlags flags=MDF_ALL) const | SpectrumMetaDataLookup | |
| ids_ | SpectrumLookup | protected |
| isNativeID(const String &id) | SpectrumLookup | static |
| MDF_ALL | SpectrumMetaDataLookup | static |
| MDF_MSLEVEL | SpectrumMetaDataLookup | static |
| MDF_NATIVEID | SpectrumMetaDataLookup | static |
| MDF_PRECURSORCHARGE | SpectrumMetaDataLookup | static |
| MDF_PRECURSORMZ | SpectrumMetaDataLookup | static |
| MDF_PRECURSORRT | SpectrumMetaDataLookup | static |
| MDF_RT | SpectrumMetaDataLookup | static |
| MDF_SCANNUMBER | SpectrumMetaDataLookup | static |
| metadata_ | SpectrumMetaDataLookup | protected |
| MetaDataFlags typedef | SpectrumMetaDataLookup | |
| n_spectra_ | SpectrumLookup | protected |
| operator=(const SpectrumMetaDataLookup &) | SpectrumMetaDataLookup | private |
| readSpectra(const SpectrumContainer &spectra, const String &scan_regexp=default_scan_regexp, bool get_precursor_rt=false) | SpectrumMetaDataLookup | inline |
| OpenMS::SpectrumLookup::readSpectra(const SpectrumContainer &spectra, const String &scan_regexp=default_scan_regexp) | SpectrumLookup | inline |
| reference_formats | SpectrumLookup | |
| regexp_name_list_ | SpectrumLookup | protected |
| regexp_names_ | SpectrumLookup | protectedstatic |
| rt_tolerance | SpectrumLookup | |
| rts_ | SpectrumLookup | protected |
| scan_regexp_ | SpectrumLookup | protected |
| scans_ | SpectrumLookup | protected |
| setScanRegExp_(const String &scan_regexp) | SpectrumLookup | protected |
| setSpectraDataRef(const String &spectra_data) | SpectrumMetaDataLookup | inline |
| spectra_data_ref | SpectrumMetaDataLookup | protected |
| SpectrumLookup() | SpectrumLookup | |
| SpectrumLookup(const SpectrumLookup &) | SpectrumLookup | private |
| SpectrumMetaDataLookup() | SpectrumMetaDataLookup | inline |
| SpectrumMetaDataLookup(const SpectrumMetaDataLookup &) | SpectrumMetaDataLookup | private |
| ~SpectrumLookup() | SpectrumLookup | virtual |
| ~SpectrumMetaDataLookup() override | SpectrumMetaDataLookup | inline |
1.9.1
