| check_defaults_ | DefaultParamHandler | protected |
| curr_region_ | TwoDOptimization | protected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| error_name_ | DefaultParamHandler | protected |
| findMatchingPeaks_(std::multimap< double, IsotopeCluster >::iterator &it, PeakMap &ms_exp) | TwoDOptimization | protected |
| getDefaults() const | DefaultParamHandler | |
| getMaxIterations() const | TwoDOptimization | inline |
| getMaxPeakDistance() const | TwoDOptimization | inline |
| getMZTolerance() const | TwoDOptimization | inline |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getPenalties() const | TwoDOptimization | inline |
| getRegionEndpoints_(PeakMap &exp, InputSpectrumIterator &first, InputSpectrumIterator &last, Size iso_map_idx, double noise_level, TwoDOptimization::Data &d) | TwoDOptimization | protected |
| getSubsections() const | DefaultParamHandler | |
| InputSpectrumIterator typedef | TwoDOptimization | |
| iso_map_ | TwoDOptimization | protected |
| matching_peaks_ | TwoDOptimization | protected |
| max_iteration_ | TwoDOptimization | protected |
| max_peak_distance_ | TwoDOptimization | protected |
| operator=(const TwoDOptimization &opt) | TwoDOptimization | |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| optimize(InputSpectrumIterator first, InputSpectrumIterator last, PeakMap &ms_exp, bool real2D=true) | TwoDOptimization | |
| optimizeRegions_(InputSpectrumIterator &first, InputSpectrumIterator &last, PeakMap &ms_exp) | TwoDOptimization | protected |
| optimizeRegionsScanwise_(InputSpectrumIterator &first, InputSpectrumIterator &last, PeakMap &ms_exp) | TwoDOptimization | protected |
| param_ | DefaultParamHandler | protected |
| penalties_ | TwoDOptimization | protected |
| real_2D_ | TwoDOptimization | protected |
| searchInScan_(std::vector< double >::iterator scan_begin, std::vector< double >::iterator scan_end, double current_mz) | TwoDOptimization | protected |
| setMaxIterations(UInt max_iteration) | TwoDOptimization | inline |
| setMaxPeakDistance(double max_peak_distance) | TwoDOptimization | inline |
| setMZTolerance(double tolerance_mz) | TwoDOptimization | inline |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setPenalties(OptimizationFunctions::PenaltyFactorsIntensity &penalties) | TwoDOptimization | inline |
| subsections_ | DefaultParamHandler | protected |
| tolerance_mz_ | TwoDOptimization | protected |
| TwoDOptimization() | TwoDOptimization | |
| TwoDOptimization(const TwoDOptimization &opt) | TwoDOptimization | |
| updateMembers_() override | TwoDOptimization | protectedvirtual |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="") | DefaultParamHandler | static |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~TwoDOptimization() override | TwoDOptimization | inline |
1.9.1
