OpenMS  2.8.0
XTandemInfile Member List

This is the complete list of members for XTandemInfile, including all inherited members.

allow_isotope_error_XTandemInfileprotected
AVERAGE enum valueXTandemInfile
batch_size_XTandemInfileprotected
cleavage_site_XTandemInfileprotected
convertModificationSet_(const std::set< ModificationDefinition > &mods, std::map< String, double > &affected_origins) constXTandemInfileprotected
DALTONS enum valueXTandemInfile
default_parameters_file_XTandemInfileprotected
enforced_encoding_XMLFileprotected
enforceEncoding_(const String &encoding)XMLFileprotected
ErrorUnit enum nameXTandemInfile
force_default_mods_XTandemInfileprotected
fragment_lower_mz_XTandemInfileprotected
fragment_mass_error_unit_XTandemInfileprotected
fragment_mass_tolerance_XTandemInfileprotected
fragment_mass_type_XTandemInfileprotected
getCleavageSite() constXTandemInfile
getDefaultParametersFilename() constXTandemInfile
getFragmentMassErrorUnit() constXTandemInfile
getFragmentMassTolerance() constXTandemInfile
getInputFilename() constXTandemInfile
getMaxPrecursorCharge() constXTandemInfile
getMaxValidEValue() constXTandemInfile
getModifications() constXTandemInfile
getNoiseSuppression() constXTandemInfile
getNumberOfMissedCleavages() constXTandemInfile
getNumberOfThreads() constXTandemInfile
getOutputFilename() constXTandemInfile
getOutputResults() constXTandemInfile
getPrecursorErrorType() constXTandemInfile
getPrecursorMassErrorUnit() constXTandemInfile
getPrecursorMassToleranceMinus() constXTandemInfile
getPrecursorMassTolerancePlus() constXTandemInfile
getTaxon() constXTandemInfile
getTaxonomyFilename() constXTandemInfile
getVersion() constXMLFile
input_filename_XTandemInfileprotected
isValid(const String &filename, std::ostream &os)XMLFile
MassType enum nameXTandemInfile
max_precursor_charge_XTandemInfileprotected
max_valid_evalue_XTandemInfileprotected
modifications_XTandemInfileprotected
MONOISOTOPIC enum valueXTandemInfile
number_of_missed_cleavages_XTandemInfileprotected
number_of_threads_XTandemInfileprotected
operator=(const XTandemInfile &rhs)XTandemInfileprotected
output_filename_XTandemInfileprotected
output_results_XTandemInfileprotected
parse_(const String &filename, XMLHandler *handler)XMLFileprotected
parseBuffer_(const std::string &buffer, XMLHandler *handler)XMLFileprotected
PPM enum valueXTandemInfile
precursor_lower_mz_XTandemInfileprotected
precursor_mass_error_unit_XTandemInfileprotected
precursor_mass_tolerance_minus_XTandemInfileprotected
precursor_mass_tolerance_plus_XTandemInfileprotected
precursor_mass_type_XTandemInfileprotected
save_(const String &filename, XMLHandler *handler) constXMLFileprotected
schema_location_XMLFileprotected
schema_version_XMLFileprotected
semi_cleavage_XTandemInfileprotected
setAllowIsotopeError(const bool allow_isotope_error)XTandemInfile
setCleavageSite(const String &cleavage_site)XTandemInfile
setDefaultParametersFilename(const String &filename)XTandemInfile
setFragmentMassErrorUnit(ErrorUnit unit)XTandemInfile
setFragmentMassTolerance(double tolerance)XTandemInfile
setInputFilename(const String &input_file)XTandemInfile
setMaxPrecursorCharge(Int max_charge)XTandemInfile
setMaxValidEValue(double value)XTandemInfile
setModifications(const ModificationDefinitionsSet &mods)XTandemInfile
setNoiseSuppression(const bool noise_suppression)XTandemInfile
setNumberOfMissedCleavages(UInt missed_cleavages)XTandemInfile
setNumberOfThreads(UInt threads)XTandemInfile
setOutputFilename(const String &output)XTandemInfile
setOutputResults(String result)XTandemInfile
setPrecursorErrorType(MassType mono_isotopic)XTandemInfile
setPrecursorMassErrorUnit(ErrorUnit unit)XTandemInfile
setPrecursorMassToleranceMinus(double tol)XTandemInfile
setPrecursorMassTolerancePlus(double tol)XTandemInfile
setSemiCleavage(const bool semi_cleavage)XTandemInfile
setTaxon(const String &taxon)XTandemInfile
setTaxonomyFilename(const String &filename)XTandemInfile
taxon_XTandemInfileprotected
taxonomy_file_XTandemInfileprotected
write(const String &filename, bool ignore_member_parameters=false, bool force_default_mods=false)XTandemInfile
writeNote_(std::ostream &os, const String &label, const String &value)XTandemInfileprotected
writeNote_(std::ostream &os, const String &label, const char *value)XTandemInfileprotected
writeNote_(std::ostream &os, const String &label, bool value)XTandemInfileprotected
writeTo_(std::ostream &os, bool ignore_member_parameters)XTandemInfileprotected
XMLFile()XMLFile
XMLFile(const String &schema_location, const String &version)XMLFile
XTandemInfile()XTandemInfile
XTandemInfile(const XTandemInfile &rhs)XTandemInfileprotected
~XMLFile()XMLFilevirtual
~XTandemInfile() overrideXTandemInfile