AsymmetricStatistics.h

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// $Maintainer: Timo Sachsenberg $
// $Authors: $
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#pragma once
 
#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/MATH/STATISTICS/BasicStatistics.h>
 
#include <vector>
#include <ostream>
#include <cmath>
 
namespace OpenMS
{
  namespace Math
  {
 
    template <typename RealT = double>
    class AsymmetricStatistics :
      public BasicStatistics<RealT>
    {
      typedef BasicStatistics<RealT> Base;
      typedef typename Base::RealType RealType;
 
      using Base::clear;
      using Base::sum_;
      using Base::mean_;
      using Base::variance_;
 
public:
 
      AsymmetricStatistics() :
        BasicStatistics<>(),
        variance1_(0),
        variance2_(0)
      {}
 
      RealType variance1() const
      {
        return variance1_;
      }
 
      RealType variance2() const
      {
        return variance2_;
      }
 
      template <typename ProbabilityIterator, typename CoordinateIterator>
      void update(ProbabilityIterator const probability_begin,
                  ProbabilityIterator const probability_end,
                  CoordinateIterator  const coordinate_begin)
      {
        // reuse...
        Base::update(probability_begin, probability_end, coordinate_begin);
 
        const RealType stdev = std::sqrt(variance_);
 
        RealType sum1 = 0;
        RealType sum2 = 0;
        variance1_ = 0;
        variance2_ = 0;
        ProbabilityIterator prob_iter = probability_begin;
        CoordinateIterator  coord_iter = coordinate_begin;
        for (; prob_iter != probability_end; ++prob_iter, ++coord_iter)
        {
          RealType diff = *coord_iter - mean_;
          RealType diff_squared = diff * diff;
 
          if (diff_squared > variance_)
          {
            if (*coord_iter < mean_)
            {
              variance1_ += (*prob_iter * diff_squared);
              sum1  += *prob_iter;
            }
            else             // ( *coord_iter > mean_ )
            {
              variance2_ += (*prob_iter * diff_squared);
              sum2  += *prob_iter;
            }
          }
          else
          {
            RealType frac = (diff / stdev + 1.) / 2.;
            RealType prob_frac = frac * *prob_iter;
            variance2_ += prob_frac * diff_squared;
            sum2  += prob_frac;
            prob_frac = *prob_iter * (1. - frac);
            variance1_ += prob_frac * diff_squared;
            sum1  += prob_frac;
          }
        }
        variance1_ /= sum1;
        variance2_ /= sum2;
        return;
      }
 
protected:
      RealType variance1_, variance2_;
    };
 
  }   // namespace Math
 
} // namespace OpenMS