ILPDCWrapper.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2023.
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// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
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#pragma once
 
 
#include <OpenMS/DATASTRUCTURES/String.h>
 
#include <vector>
#include <set>
#include <map>
 
namespace OpenMS
{
 
  class MassExplainer;
  class FeatureMap;
  class ChargePair;
 
  class OPENMS_DLLAPI ILPDCWrapper
  {
 
public:
    typedef std::vector<ChargePair> PairsType;
    typedef PairsType::size_type PairsIndex;
 
    ILPDCWrapper();
 
    virtual ~ILPDCWrapper();
 
    double compute(const FeatureMap& fm, PairsType& pairs, Size verbose_level) const;
 
private:
 
    double computeSlice_(const FeatureMap& fm,
                         PairsType& pairs,
                         const PairsIndex margin_left,
                         const PairsIndex margin_right,
                         const Size verbose_level) const;
 
    double computeSliceOld_(const FeatureMap& fm,
                            PairsType& pairs,
                            const PairsIndex margin_left,
                            const PairsIndex margin_right,
                            const Size verbose_level) const;
 
    double getLogScore_(const PairsType::value_type& pair, const FeatureMap& fm) const;
 
    typedef std::map<String, std::set<Size> > FeatureType_;
 
    // add another charge annotation variant for a feature
    void updateFeatureVariant_(FeatureType_& f_set, const String& rota_l, const Size& v) const;
 
 
 
  }; // !class
 
} // !namespace