LayerData1DPeak.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
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#pragma once
 
#include <OpenMS/VISUAL/LayerData1DBase.h>
#include <OpenMS/VISUAL/LayerDataPeak.h>
 
namespace OpenMS
{
  
  class OPENMS_GUI_DLLAPI LayerData1DPeak : public LayerDataPeak, public LayerData1DBase
  {
  public:
    LayerData1DPeak()
      : LayerDataBase(DT_PEAK)
    {
    }
 
    LayerData1DPeak(const LayerDataPeak& base) : LayerDataBase(base), LayerDataPeak(base)
    {
    }
 
 
    std::unique_ptr<LayerStoreData> storeVisibleData(const RangeAllType& visible_range, const DataFilters& layer_filters) const override;
    std::unique_ptr<LayerStoreData> storeFullData() const override;
 
    std::unique_ptr<Painter1DBase> getPainter1D() const override;
 
    bool hasIndex(Size index) const override
    {
      return index < peak_map_->size();
    }
 
    RangeAllType getRangeForArea(const RangeAllType partial_range) const override
    {
      const auto& spec = getCurrentSpectrum();
      auto spec_filtered = SpectrumType();
      spec_filtered.insert(spec_filtered.begin(), spec.MZBegin(partial_range.getMinMZ()), spec.MZEnd(partial_range.getMaxMZ()));
      spec_filtered.updateRanges();
      return RangeAllType().assign(spec_filtered.getRange());
    }
 
    const ExperimentType::SpectrumType& getCurrentSpectrum() const
    {
      return LayerDataPeak::getSpectrum(current_idx_);
    }
 
 
    void updateRanges() override
    {
      LayerDataPeak::updateRanges();
    }
 
    RangeAllType getRange1D() const override
    {
      return RangeAllType().assign(getCurrentSpectrum().getRange());
    }
 
    // docu in base class
    QMenu* getContextMenuAnnotation(Annotation1DItem* annot_item, bool& need_repaint) override;
 
    PeakIndex findClosestDataPoint(const RangeAllType& area) const override;
 
    // docu in base class
    Annotation1DItem* addPeakAnnotation(const PeakIndex& peak_index, const QString& text, const QColor& color) override;
 
    void synchronizePeakAnnotations();
 
    void removePeakAnnotationsFromPeptideHit(const std::vector<Annotation1DItem*>& selected_annotations);
 
    void updatePeptideHitAnnotations_(PeptideHit& hit);
 
  protected:
  };
 
}// namespace OpenMS