OMSFile.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2023.
//
// This software is released under a three-clause BSD license:
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//    notice, this list of conditions and the following disclaimer.
//  * Redistributions in binary form must reproduce the above copyright
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//    documentation and/or other materials provided with the distribution.
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//    may be used to endorse or promote products derived from this software
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// For a full list of authors, refer to the file AUTHORS.
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// --------------------------------------------------------------------------
// $Maintainer: Hendrik Weisser $
// $Authors: Hendrik Weisser $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/METADATA/ID/IdentificationData.h>
 
namespace OpenMS
{
  class FeatureMap;
  class ConsensusMap;
 
  class OPENMS_DLLAPI OMSFile: public ProgressLogger
  {
  public:
    explicit OMSFile(LogType log_type = LogType::NONE):
      log_type_(log_type)
    {
      setLogType(log_type);
    }
 
    void store(const String& filename, const IdentificationData& id_data);
 
    void store(const String& filename, const FeatureMap& features);
 
    void store(const String& filename, const ConsensusMap& consensus);
 
    void load(const String& filename, IdentificationData& id_data);
 
    void load(const String& filename, FeatureMap& features);
 
    void load(const String& filename, ConsensusMap& consensus);
 
    void exportToJSON(const String& filename_in, const String& filename_out);
 
  protected:
    LogType log_type_;
  };
} // namespace OpenMS