FeatureFinderMultiplexAlgorithm Member List

This is the complete list of members for FeatureFinderMultiplexAlgorithm, including all inherited members.

centroided_	FeatureFinderMultiplexAlgorithm	protected
charge_max_	FeatureFinderMultiplexAlgorithm	protected
charge_min_	FeatureFinderMultiplexAlgorithm	protected
check_defaults_	DefaultParamHandler	protected
CMD enum value	ProgressLogger
consensus_map_	FeatureFinderMultiplexAlgorithm	protected
correctPeptideIntensities_(const MultiplexIsotopicPeakPattern &pattern, std::map< size_t, SplinePackage > &spline_chromatograms, const std::vector< double > &rt_peptide, std::vector< double > &intensity_peptide) const	FeatureFinderMultiplexAlgorithm	protected
current_logger_	ProgressLogger	mutableprotected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
determinePeptideIntensitiesCentroided_(const MultiplexIsotopicPeakPattern &pattern, const std::multimap< size_t, MultiplexSatelliteCentroided > &satellites)	FeatureFinderMultiplexAlgorithm	protected
determinePeptideIntensitiesProfile_(const MultiplexIsotopicPeakPattern &pattern, const std::multimap< size_t, MultiplexSatelliteProfile > &satellites)	FeatureFinderMultiplexAlgorithm	protected
endProgress() const	ProgressLogger
error_name_	DefaultParamHandler	protected
exp_blacklist_	FeatureFinderMultiplexAlgorithm	protected
exp_centroid_	FeatureFinderMultiplexAlgorithm	protected
exp_profile_	FeatureFinderMultiplexAlgorithm	protected
feature_map_	FeatureFinderMultiplexAlgorithm	protected
FeatureFinderMultiplexAlgorithm()	FeatureFinderMultiplexAlgorithm
generateMapsCentroided_(const std::vector< MultiplexIsotopicPeakPattern > &patterns, const std::vector< MultiplexFilteredMSExperiment > &filter_results, std::vector< std::map< int, GridBasedCluster > > &cluster_results)	FeatureFinderMultiplexAlgorithm	protected
generateMapsProfile_(const std::vector< MultiplexIsotopicPeakPattern > &patterns, const std::vector< MultiplexFilteredMSExperiment > &filter_results, const std::vector< std::map< int, GridBasedCluster > > &cluster_results)	FeatureFinderMultiplexAlgorithm	protected
generatePeakPatterns_(int charge_min, int charge_max, int peaks_per_peptide_max, const std::vector< MultiplexDeltaMasses > &mass_pattern_list)	FeatureFinderMultiplexAlgorithm	protected
getBlacklist()	FeatureFinderMultiplexAlgorithm
getConsensusMap()	FeatureFinderMultiplexAlgorithm
getDefaults() const	DefaultParamHandler
getFeatureMap()	FeatureFinderMultiplexAlgorithm
getLogType() const	ProgressLogger
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
GUI enum value	ProgressLogger
isotopes_per_peptide_max_	FeatureFinderMultiplexAlgorithm	protected
isotopes_per_peptide_min_	FeatureFinderMultiplexAlgorithm	protected
label_mass_shift_	FeatureFinderMultiplexAlgorithm	protected
last_invoke_	ProgressLogger	mutableprotected
LogType enum name	ProgressLogger
logTypeToFactoryName_(LogType type)	ProgressLogger	protectedstatic
nextProgress() const	ProgressLogger
NONE enum value	ProgressLogger
OpenMS::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)	ProgressLogger
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
prog_log_	FeatureFinderMultiplexAlgorithm	protected
progress_	FeatureFinderMultiplexAlgorithm	protected
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
recursion_depth_	ProgressLogger	protectedstatic
run(MSExperiment &exp, bool progress)	FeatureFinderMultiplexAlgorithm
setLogType(LogType type) const	ProgressLogger
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setProgress(SignedSize value) const	ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
subsections_	DefaultParamHandler	protected
type_	ProgressLogger	mutableprotected
updateMembers_()	DefaultParamHandler	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual
~ProgressLogger()	ProgressLogger	virtual